RNA–Protein interactions for RNA: ENST00000588542.5

DDX39A-207, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 1,297 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-207ENST00000588542 NIPSNAP3AQ9UFN0 247 aaPredicted RBP18.3■□□□□ 0.52
DDX39A-207ENST00000588542 CAPN7Q9Y6W3 813 aa18.3■□□□□ 0.52
DDX39A-207ENST00000588542 SPTAN1Q13813 2472 aaKnown RBP18.29■□□□□ 0.52
DDX39A-207ENST00000588542 DSPPQ9NZW4 1301 aa18.29■□□□□ 0.52
DDX39A-207ENST00000588542 GTPBP1O00178 669 aaKnown RBP18.29■□□□□ 0.52
DDX39A-207ENST00000588542 ZG16O60844 167 aa18.29■□□□□ 0.52
DDX39A-207ENST00000588542 UBL4AP11441 157 aa18.29■□□□□ 0.52
DDX39A-207ENST00000588542 GPX2P18283 190 aa18.29■□□□□ 0.52
DDX39A-207ENST00000588542 RPS4Y1P22090 263 aaKnown RBP18.29■□□□□ 0.52
DDX39A-207ENST00000588542 LHX2P50458 406 aa18.29■□□□□ 0.52
DDX39A-207ENST00000588542 P2RX1P51575 399 aa18.29■□□□□ 0.52
DDX39A-207ENST00000588542 PER3P56645 1201 aa18.29■□□□□ 0.52
DDX39A-207ENST00000588542 PLAURQ03405 335 aa18.29■□□□□ 0.52
DDX39A-207ENST00000588542 NFYCQ13952 458 aa18.29■□□□□ 0.52
DDX39A-207ENST00000588542 MTDHQ86UE4 582 aaKnown RBP18.29■□□□□ 0.52
DDX39A-207ENST00000588542 SNX32Q86XE0 403 aa18.29■□□□□ 0.52
DDX39A-207ENST00000588542 ULK2Q8IYT8 1036 aa18.29■□□□□ 0.52
DDX39A-207ENST00000588542 OR5M1Q8NGP8 315 aa18.29■□□□□ 0.52
DDX39A-207ENST00000588542 MAL2Q969L2 176 aa18.29■□□□□ 0.52
DDX39A-207ENST00000588542 TMEM19Q96HH6 336 aa18.29■□□□□ 0.52
DDX39A-207ENST00000588542 SFXN2Q96NB2 322 aa18.29■□□□□ 0.52
DDX39A-207ENST00000588542 ANKRD27Q96NW4 1050 aa18.29■□□□□ 0.52
DDX39A-207ENST00000588542 CCDC106Q9BWC9 280 aa18.29■□□□□ 0.52
DDX39A-207ENST00000588542 TRIM8Q9BZR9 551 aa18.29■□□□□ 0.52
DDX39A-207ENST00000588542 MTHFD2LQ9H903 347 aaPredicted RBP18.29■□□□□ 0.52
DDX39A-207ENST00000588542 A4GALTQ9NPC4 353 aa18.29■□□□□ 0.52
DDX39A-207ENST00000588542 MED17Q9NVC6 651 aa18.29■□□□□ 0.52
DDX39A-207ENST00000588542 SUCOQ9UBS9 1254 aaKnown RBP18.29■□□□□ 0.52
DDX39A-207ENST00000588542 VDAC3Q9Y277 283 aa18.29■□□□□ 0.52
DDX39A-207ENST00000588542 FAM215AQ9Y5M1 114 aa18.29■□□□□ 0.52
DDX39A-207ENST00000588542 A0A087WZY1 265 aa18.28■□□□□ 0.52
DDX39A-207ENST00000588542 LOC100653049A0A140TA62 436 aa18.28■□□□□ 0.52
DDX39A-207ENST00000588542 OR2M5A3KFT3 312 aa18.28■□□□□ 0.52
DDX39A-207ENST00000588542 AGAP5A6NIR3 686 aa18.28■□□□□ 0.52
DDX39A-207ENST00000588542 CLDN24A6NM45 220 aa18.28■□□□□ 0.52
DDX39A-207ENST00000588542 FIGNL2A6NMB9 653 aa18.28■□□□□ 0.52
DDX39A-207ENST00000588542 SHISA8B8ZZ34 492 aa18.28■□□□□ 0.52
DDX39A-207ENST00000588542 ZNF264O43296 627 aa18.28■□□□□ 0.52
DDX39A-207ENST00000588542 EIF4E2O60573 245 aaKnown RBP18.28■□□□□ 0.52
DDX39A-207ENST00000588542 CCDC22O60826 627 aa18.28■□□□□ 0.52
DDX39A-207ENST00000588542 WDR1O75083 606 aa18.28■□□□□ 0.52
DDX39A-207ENST00000588542 BCAS1O75363 584 aaPredicted RBP18.28■□□□□ 0.52
DDX39A-207ENST00000588542 KRT34O76011 436 aa18.28■□□□□ 0.52
DDX39A-207ENST00000588542 ESRRAP11474 423 aaPredicted RBP18.28■□□□□ 0.52
DDX39A-207ENST00000588542 CPN1P15169 458 aa18.28■□□□□ 0.52
DDX39A-207ENST00000588542 ACVR2AP27037 513 aa18.28■□□□□ 0.52
DDX39A-207ENST00000588542 PGM1P36871 562 aa18.28■□□□□ 0.52
DDX39A-207ENST00000588542 STARP49675 285 aa18.28■□□□□ 0.52
DDX39A-207ENST00000588542 SKP2Q13309 424 aa18.28■□□□□ 0.52
DDX39A-207ENST00000588542 SELPLGQ14242 412 aa18.28■□□□□ 0.52
DDX39A-207ENST00000588542 MAPRE2Q15555 327 aa18.28■□□□□ 0.52
DDX39A-207ENST00000588542 PLPPR5Q32ZL2 321 aa18.28■□□□□ 0.52
DDX39A-207ENST00000588542 COQ5Q5HYK3 327 aa18.28■□□□□ 0.52
DDX39A-207ENST00000588542 RPS26P11Q5JNZ5 115 aaPredicted RBP18.28■□□□□ 0.52
DDX39A-207ENST00000588542 REP15Q6BDI9 236 aa18.28■□□□□ 0.52
DDX39A-207ENST00000588542 AAGABQ6PD74 315 aa18.28■□□□□ 0.52
DDX39A-207ENST00000588542 FAM71CQ8NEG0 241 aa18.28■□□□□ 0.52
DDX39A-207ENST00000588542 PHF10Q8WUB8 498 aaKnown RBP18.28■□□□□ 0.52
DDX39A-207ENST00000588542 PMM1Q92871 262 aa18.28■□□□□ 0.52
DDX39A-207ENST00000588542 ZNF524Q96C55 264 aa18.28■□□□□ 0.52
DDX39A-207ENST00000588542 LAT2Q9GZY6 243 aa18.28■□□□□ 0.52
DDX39A-207ENST00000588542 MYLK2Q9H1R3 596 aa18.28■□□□□ 0.52
DDX39A-207ENST00000588542 CALML5Q9NZT1 146 aa18.28■□□□□ 0.52
DDX39A-207ENST00000588542 CAMK2AQ9UQM7 478 aa18.28■□□□□ 0.52
DDX39A-207ENST00000588542 ZNF337Q9Y3M9 751 aa18.28■□□□□ 0.52
DDX39A-207ENST00000588542 SPTBN1Q01082 2364 aaKnown RBP18.28■□□□□ 0.52
DDX39A-207ENST00000588542 ICE1Q9Y2F5 2266 aa18.27■□□□□ 0.52
DDX39A-207ENST00000588542 BBIP1A8MTZ0 92 aa18.27■□□□□ 0.52
DDX39A-207ENST00000588542 EVPLLA8MZ36 301 aa18.27■□□□□ 0.52
DDX39A-207ENST00000588542 CSTAP01040 98 aa18.27■□□□□ 0.52
DDX39A-207ENST00000588542 LINGO3P0C6S8 592 aa18.27■□□□□ 0.52
DDX39A-207ENST00000588542 ARAFP10398 606 aa18.27■□□□□ 0.52
DDX39A-207ENST00000588542 GCKP35557 465 aa18.27■□□□□ 0.52
DDX39A-207ENST00000588542 CRISP3P54108 245 aa18.27■□□□□ 0.52
DDX39A-207ENST00000588542 SUMO3P55854 103 aaPredicted RBP18.27■□□□□ 0.52
DDX39A-207ENST00000588542 CAPRIN1Q14444 709 aaKnown RBP18.27■□□□□ 0.52
DDX39A-207ENST00000588542 ADRM1Q16186 407 aa18.27■□□□□ 0.52
DDX39A-207ENST00000588542 TRMT5Q32P41 509 aaKnown RBP18.27■□□□□ 0.52
DDX39A-207ENST00000588542 RAET1LQ5VY80 246 aa18.27■□□□□ 0.52
DDX39A-207ENST00000588542 MTFR2Q6P444 385 aa18.27■□□□□ 0.52
DDX39A-207ENST00000588542 EIF3MQ7L2H7 374 aaKnown RBP18.27■□□□□ 0.52
DDX39A-207ENST00000588542 PIGWQ7Z7B1 504 aa18.27■□□□□ 0.52
DDX39A-207ENST00000588542 TREML1Q86YW5 311 aa18.27■□□□□ 0.52
DDX39A-207ENST00000588542 PM20D2Q8IYS1 436 aa18.27■□□□□ 0.52
DDX39A-207ENST00000588542 POC1BQ8TC44 478 aa18.27■□□□□ 0.52
DDX39A-207ENST00000588542 GPR119Q8TDV5 335 aa18.27■□□□□ 0.52
DDX39A-207ENST00000588542 ARSGQ96EG1 525 aa18.27■□□□□ 0.52
DDX39A-207ENST00000588542 DOCK7Q96N67 2140 aa18.27■□□□□ 0.52
DDX39A-207ENST00000588542 TREX2Q9BQ50 279 aaPredicted RBP18.27■□□□□ 0.52
DDX39A-207ENST00000588542 ST6GALNAC1Q9NSC7 600 aaPredicted RBP18.27■□□□□ 0.52
DDX39A-207ENST00000588542 ALKBH4Q9NXW9 302 aa18.27■□□□□ 0.52
DDX39A-207ENST00000588542 CORO2BQ9UQ03 480 aa18.27■□□□□ 0.52
DDX39A-207ENST00000588542 SLC35A3Q9Y2D2 325 aa18.27■□□□□ 0.52
DDX39A-207ENST00000588542 A0A0G2JPF8 293 aa18.26■□□□□ 0.51
DDX39A-207ENST00000588542 C7orf72A4D263 438 aa18.26■□□□□ 0.51
DDX39A-207ENST00000588542 AHRRA9YTQ3 701 aa18.26■□□□□ 0.51
DDX39A-207ENST00000588542 KDM4EB2RXH2 506 aaPredicted RBP18.26■□□□□ 0.51
DDX39A-207ENST00000588542 HNRNPCL2B2RXH8 293 aa18.26■□□□□ 0.51
DDX39A-207ENST00000588542 HNRNPCL3B7ZW38 293 aa18.26■□□□□ 0.51
DDX39A-207ENST00000588542 FXYD1O00168 92 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms