RNA–Protein interactions for RNA: ENST00000586813.5

TRAF4-216, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 789 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-216ENST00000586813 HSPA4LO95757 839 aa17.26■□□□□ 0.35
TRAF4-216ENST00000586813 CHEK2O96017 543 aa17.26■□□□□ 0.35
TRAF4-216ENST00000586813 ELK4P28324 431 aa17.26■□□□□ 0.35
TRAF4-216ENST00000586813 SHC1P29353 583 aa17.26■□□□□ 0.35
TRAF4-216ENST00000586813 SFTPDP35247 375 aa17.26■□□□□ 0.35
TRAF4-216ENST00000586813 EIF1P41567 113 aaKnown RBP17.26■□□□□ 0.35
TRAF4-216ENST00000586813 ASMTP46597 345 aa17.26■□□□□ 0.35
TRAF4-216ENST00000586813 CARD18P57730 90 aa17.26■□□□□ 0.35
TRAF4-216ENST00000586813 POU6F2P78424 691 aaPredicted RBP17.26■□□□□ 0.35
TRAF4-216ENST00000586813 PPP2R2BQ00005 443 aa17.26■□□□□ 0.35
TRAF4-216ENST00000586813 ZNF117Q03924 483 aa17.26■□□□□ 0.35
TRAF4-216ENST00000586813 PCLAFQ15004 111 aa17.26■□□□□ 0.35
TRAF4-216ENST00000586813 GALNTL6Q49A17 601 aa17.26■□□□□ 0.35
TRAF4-216ENST00000586813 GTF2IRD2BQ6EKJ0 949 aa17.26■□□□□ 0.35
TRAF4-216ENST00000586813 GTF2IRD2Q86UP8 949 aa17.26■□□□□ 0.35
TRAF4-216ENST00000586813 C10orf107Q8IVU9 208 aa17.26■□□□□ 0.35
TRAF4-216ENST00000586813 ABHD3Q8WU67 409 aa17.26■□□□□ 0.35
TRAF4-216ENST00000586813 ROBO4Q8WZ75 1007 aa17.26■□□□□ 0.35
TRAF4-216ENST00000586813 CDS1Q92903 461 aa17.26■□□□□ 0.35
TRAF4-216ENST00000586813 S100PBPQ96BU1 408 aa17.26■□□□□ 0.35
TRAF4-216ENST00000586813 STACQ99469 402 aa17.26■□□□□ 0.35
TRAF4-216ENST00000586813 TRMOQ9BU70 441 aa17.26■□□□□ 0.35
TRAF4-216ENST00000586813 GATA5Q9BWX5 397 aaPredicted RBP17.26■□□□□ 0.35
TRAF4-216ENST00000586813 DUSP22Q9NRW4 184 aa17.26■□□□□ 0.35
TRAF4-216ENST00000586813 ZCCHC3Q9NUD5 404 aaKnown RBP17.26■□□□□ 0.35
TRAF4-216ENST00000586813 MID2Q9UJV3 735 aa17.26■□□□□ 0.35
TRAF4-216ENST00000586813 DNAJC15Q9Y5T4 150 aa17.26■□□□□ 0.35
TRAF4-216ENST00000586813 CSPG4Q6UVK1 2322 aa17.26■□□□□ 0.35
TRAF4-216ENST00000586813 SMIM23A6NLE4 172 aa17.25■□□□□ 0.35
TRAF4-216ENST00000586813 KIAA1324LA8MWY0 1029 aaPredicted RBP17.25■□□□□ 0.35
TRAF4-216ENST00000586813 HMGN2P05204 90 aaKnown RBP17.25■□□□□ 0.35
TRAF4-216ENST00000586813 BCKDHAP12694 445 aa17.25■□□□□ 0.35
TRAF4-216ENST00000586813 KRT4P19013 534 aa17.25■□□□□ 0.35
TRAF4-216ENST00000586813 ATP5J2P56134 94 aa17.25■□□□□ 0.35
TRAF4-216ENST00000586813 LASP1Q14847 261 aaKnown RBP17.25■□□□□ 0.35
TRAF4-216ENST00000586813 MLC1Q15049 377 aa17.25■□□□□ 0.35
TRAF4-216ENST00000586813 R3HCC1LQ7Z5L2 792 aaKnown RBP17.25■□□□□ 0.35
TRAF4-216ENST00000586813 TDRPQ86YL5 185 aa17.25■□□□□ 0.35
TRAF4-216ENST00000586813 STEAP2Q8NFT2 490 aa17.25■□□□□ 0.35
TRAF4-216ENST00000586813 AKAP1Q92667 903 aaKnown RBP eCLIP17.25■□□□□ 0.35
TRAF4-216ENST00000586813 CPNE4Q96A23 557 aaPredicted RBP17.25■□□□□ 0.35
TRAF4-216ENST00000586813 SRXN1Q9BYN0 137 aa17.25■□□□□ 0.35
TRAF4-216ENST00000586813 PPCSQ9HAB8 311 aa17.25■□□□□ 0.35
TRAF4-216ENST00000586813 KLHL13Q9P2N7 655 aa17.25■□□□□ 0.35
TRAF4-216ENST00000586813 KIF2AO00139 706 aaPredicted RBP17.24■□□□□ 0.35
TRAF4-216ENST00000586813 GCM2O75603 506 aaPredicted RBP17.24■□□□□ 0.35
TRAF4-216ENST00000586813 PABPC4LP0CB38 370 aaKnown RBP17.24■□□□□ 0.35
TRAF4-216ENST00000586813 HPCAL1P37235 193 aa17.24■□□□□ 0.35
TRAF4-216ENST00000586813 RNPS1Q15287 305 aaKnown RBP17.24■□□□□ 0.35
TRAF4-216ENST00000586813 TMEM201Q5SNT2 666 aa17.24■□□□□ 0.35
TRAF4-216ENST00000586813 TFAP2EQ6VUC0 442 aa17.24■□□□□ 0.35
TRAF4-216ENST00000586813 MTERF4Q7Z6M4 381 aaKnown RBP17.24■□□□□ 0.35
TRAF4-216ENST00000586813 DDIASQ8IXT1 998 aa17.24■□□□□ 0.35
TRAF4-216ENST00000586813 C4orf33Q8N1A6 199 aa17.24■□□□□ 0.35
TRAF4-216ENST00000586813 GABRG1Q8N1C3 465 aa17.24■□□□□ 0.35
TRAF4-216ENST00000586813 KIF18AQ8NI77 898 aa17.24■□□□□ 0.35
TRAF4-216ENST00000586813 RAB3IL1Q8TBN0 382 aa17.24■□□□□ 0.35
TRAF4-216ENST00000586813 PHOSPHO1Q8TCT1 267 aa17.24■□□□□ 0.35
TRAF4-216ENST00000586813 EPS8L3Q8TE67 593 aaKnown RBP17.24■□□□□ 0.35
TRAF4-216ENST00000586813 TWIST2Q8WVJ9 160 aa17.24■□□□□ 0.35
TRAF4-216ENST00000586813 CHMP6Q96FZ7 201 aa17.24■□□□□ 0.35
TRAF4-216ENST00000586813 REXO5Q96IC2 774 aaKnown RBP17.24■□□□□ 0.35
TRAF4-216ENST00000586813 TACO1Q9BSH4 297 aaKnown RBP17.24■□□□□ 0.35
TRAF4-216ENST00000586813 PIGUQ9H490 435 aa17.24■□□□□ 0.35
TRAF4-216ENST00000586813 TIGARQ9NQ88 270 aa17.24■□□□□ 0.35
TRAF4-216ENST00000586813 GIN1Q9NXP7 522 aa17.24■□□□□ 0.35
TRAF4-216ENST00000586813 TMEM233B4DJY2 109 aa17.23■□□□□ 0.35
TRAF4-216ENST00000586813 SCAMP2O15127 329 aaKnown RBP17.23■□□□□ 0.35
TRAF4-216ENST00000586813 OIP5O43482 229 aa17.23■□□□□ 0.35
TRAF4-216ENST00000586813 EFNA2O43921 213 aa17.23■□□□□ 0.35
TRAF4-216ENST00000586813 TRIM13O60858 407 aa17.23■□□□□ 0.35
TRAF4-216ENST00000586813 CHRNGP07510 517 aa17.23■□□□□ 0.35
TRAF4-216ENST00000586813 DDX5P17844 614 aaKnown RBP17.23■□□□□ 0.35
TRAF4-216ENST00000586813 ATP6V1C1P21283 382 aa17.23■□□□□ 0.35
TRAF4-216ENST00000586813 SUMO3P55854 103 aaPredicted RBP17.23■□□□□ 0.35
TRAF4-216ENST00000586813 RPS4XP62701 263 aaKnown RBP17.23■□□□□ 0.35
TRAF4-216ENST00000586813 CAPRIN1Q14444 709 aaKnown RBP17.23■□□□□ 0.35
TRAF4-216ENST00000586813 TSC22D1Q15714 1073 aa17.23■□□□□ 0.35
TRAF4-216ENST00000586813 ALKBH2Q6NS38 261 aa17.23■□□□□ 0.35
TRAF4-216ENST00000586813 CBLN3Q6UW01 205 aa17.23■□□□□ 0.35
TRAF4-216ENST00000586813 LRIG3Q6UXM1 1119 aa17.23■□□□□ 0.35
TRAF4-216ENST00000586813 NUFIP2Q7Z417 695 aaKnown RBP17.23■□□□□ 0.35
TRAF4-216ENST00000586813 ZNF527Q8NB42 609 aa17.23■□□□□ 0.35
TRAF4-216ENST00000586813 UBLCP1Q8WVY7 318 aaPredicted RBP17.23■□□□□ 0.35
TRAF4-216ENST00000586813 MDFIQ99750 246 aa17.23■□□□□ 0.35
TRAF4-216ENST00000586813 HDHD5Q9BXW7 423 aa17.23■□□□□ 0.35
TRAF4-216ENST00000586813 ATP6V1HQ9UI12 483 aa17.23■□□□□ 0.35
TRAF4-216ENST00000586813 ICAM5Q9UMF0 924 aa17.23■□□□□ 0.35
TRAF4-216ENST00000586813 LAMP3Q9UQV4 416 aa17.23■□□□□ 0.35
TRAF4-216ENST00000586813 RNF115Q9Y4L5 304 aa17.23■□□□□ 0.35
TRAF4-216ENST00000586813 SNX8Q9Y5X2 465 aa17.23■□□□□ 0.35
TRAF4-216ENST00000586813 NUP214P35658 2090 aaPredicted RBP17.23■□□□□ 0.35
TRAF4-216ENST00000586813 CR1P17927 2039 aa17.23■□□□□ 0.35
TRAF4-216ENST00000586813 CHD3Q12873 2000 aaKnown RBP17.23■□□□□ 0.35
TRAF4-216ENST00000586813 NPIPA5A0A0B4J1W7 369 aa17.22■□□□□ 0.35
TRAF4-216ENST00000586813 GJE1A6NN92 205 aa17.22■□□□□ 0.35
TRAF4-216ENST00000586813 TMEM114B3SHH9 223 aa17.22■□□□□ 0.35
TRAF4-216ENST00000586813 NPIPA7E9PJI5 369 aa17.22■□□□□ 0.35
TRAF4-216ENST00000586813 PIP5K1BO14986 540 aa17.22■□□□□ 0.35
TRAF4-216ENST00000586813 NUDT14O95848 222 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms