RNA–Protein interactions for RNA: ENST00000581631.1

SMCHD1-206, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 729 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-206ENST00000581631 NUDCQ9Y266 331 aa1.92□□□□□ -2.1
SMCHD1-206ENST00000581631 PSMB11A5LHX3 300 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 RNF222A6NCQ9 220 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 A6NDX4 124 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 CFAP73A6NFT4 308 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 FAM74A7A6NL05 159 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 WASHC1A8K0Z3 465 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 ZNF705EA8MWA4 302 aaPredicted RBP1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 DDX39AO00148 427 aaKnown RBP1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 LGALS8O00214 317 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 STX11O75558 287 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 INSP01308 110 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 THRBP10828 461 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 RPS2P15880 293 aaKnown RBP1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 ATP5A1P25705 553 aaKnown RBP1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 ADSSP30520 456 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 SFNP31947 248 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 EPHX2P34913 555 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 EXOSC2Q13868 293 aaKnown RBP1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 SYPL1Q16563 259 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 CCDC40Q4G0X9 1142 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 FAM74A3Q4VXF1 159 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 PAGE3Q5JUK9 113 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 ATF7IP2Q5U623 682 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 CERS5Q8N5B7 392 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 Q8N9W7 124 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 ZNF540Q8NDQ6 660 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 STKLD1Q8NE28 680 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 KIR2DL5BQ8NHK3 375 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 BLOC1S5Q8TDH9 187 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 DQX1Q8TE96 717 aaKnown RBP1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 OR1E3Q8WZA6 343 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 ATP6V0A1Q93050 837 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 NCLNQ969V3 563 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 SDSLQ96GA7 329 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 NSMCE2Q96MF7 247 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 ARHGDIGQ99819 225 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 XPO4Q9C0E2 1151 aaKnown RBP1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 PPDPFQ9H3Y8 114 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 ZDHHC11Q9H8X9 412 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 SH2D2AQ9NP31 389 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 MTRRQ9UBK8 725 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 CRLS1Q9UJA2 301 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 ZNF225Q9UK10 706 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 PSG11Q9UQ72 335 aa1.91□□□□□ -2.1
SMCHD1-206ENST00000581631 SLC9B1P1A6NJY1 282 aa1.9□□□□□ -2.11
SMCHD1-206ENST00000581631 LRRC30A6NM36 301 aa1.9□□□□□ -2.11
SMCHD1-206ENST00000581631 FAM166BA8MTA8 275 aa1.9□□□□□ -2.11
SMCHD1-206ENST00000581631 A8MUA0 341 aa1.9□□□□□ -2.11
SMCHD1-206ENST00000581631 FCN1O00602 326 aa1.9□□□□□ -2.11
SMCHD1-206ENST00000581631 KLF8O95600 359 aaPredicted RBP1.9□□□□□ -2.11
SMCHD1-206ENST00000581631 ZNF44P15621 663 aa1.9□□□□□ -2.11
SMCHD1-206ENST00000581631 RCC1P18754 421 aaPredicted RBP1.9□□□□□ -2.11
SMCHD1-206ENST00000581631 SERPINA2P20848 420 aa1.9□□□□□ -2.11
SMCHD1-206ENST00000581631 BDH1Q02338 343 aa1.9□□□□□ -2.11
SMCHD1-206ENST00000581631 RGS1Q08116 209 aa1.9□□□□□ -2.11
SMCHD1-206ENST00000581631 CCDC184Q52MB2 194 aa1.9□□□□□ -2.11
SMCHD1-206ENST00000581631 NEK5Q6P3R8 708 aa1.9□□□□□ -2.11
SMCHD1-206ENST00000581631 TMEM184AQ6ZMB5 413 aa1.9□□□□□ -2.11
SMCHD1-206ENST00000581631 LANCL3Q6ZV70 420 aa1.9□□□□□ -2.11
SMCHD1-206ENST00000581631 MIER3Q7Z3K6 550 aa1.9□□□□□ -2.11
SMCHD1-206ENST00000581631 EFCAB13Q8IY85 973 aa1.9□□□□□ -2.11
SMCHD1-206ENST00000581631 FAM71E2Q8N5Q1 922 aa1.9□□□□□ -2.11
SMCHD1-206ENST00000581631 ANKRD20A12PQ8NF67 263 aa1.9□□□□□ -2.11
SMCHD1-206ENST00000581631 CNIH3Q8TBE1 160 aa1.9□□□□□ -2.11
SMCHD1-206ENST00000581631 M1APQ8TC57 530 aa1.9□□□□□ -2.11
SMCHD1-206ENST00000581631 ATP6V0BQ99437 205 aa1.9□□□□□ -2.11
SMCHD1-206ENST00000581631 MCHR1Q99705 422 aa1.9□□□□□ -2.11
SMCHD1-206ENST00000581631 CHRDL1Q9BU40 450 aa1.9□□□□□ -2.11
SMCHD1-206ENST00000581631 MAGT1Q9H0U3 335 aa1.9□□□□□ -2.11
SMCHD1-206ENST00000581631 VCXQ9H320 206 aa1.9□□□□□ -2.11
SMCHD1-206ENST00000581631 DCDC2Q9UHG0 476 aa1.9□□□□□ -2.11
SMCHD1-206ENST00000581631 NOL7Q9UMY1 257 aaKnown RBP1.9□□□□□ -2.11
SMCHD1-206ENST00000581631 IGKV2-28A0A075B6P5 120 aa1.89□□□□□ -2.11
SMCHD1-206ENST00000581631 BCAS2O75934 225 aaPredicted RBP1.89□□□□□ -2.11
SMCHD1-206ENST00000581631 WISP3O95389 354 aaPredicted RBP1.89□□□□□ -2.11
SMCHD1-206ENST00000581631 IGKV2D-28P01615 120 aa1.89□□□□□ -2.11
SMCHD1-206ENST00000581631 MMP1P03956 469 aa1.89□□□□□ -2.11
SMCHD1-206ENST00000581631 DLSTP36957 453 aa1.89□□□□□ -2.11
SMCHD1-206ENST00000581631 SLC26A5P58743 744 aa1.89□□□□□ -2.11
SMCHD1-206ENST00000581631 PFN3P60673 137 aa1.89□□□□□ -2.11
SMCHD1-206ENST00000581631 OSTNP61366 133 aa1.89□□□□□ -2.11
SMCHD1-206ENST00000581631 PAX5Q02548 391 aa1.89□□□□□ -2.11
SMCHD1-206ENST00000581631 PDIA5Q14554 519 aa1.89□□□□□ -2.11
SMCHD1-206ENST00000581631 PTGES3Q15185 160 aaKnown RBP1.89□□□□□ -2.11
SMCHD1-206ENST00000581631 NSDHLQ15738 373 aa1.89□□□□□ -2.11
SMCHD1-206ENST00000581631 CHI3L2Q15782 390 aa1.89□□□□□ -2.11
SMCHD1-206ENST00000581631 LDLRAP1Q5SW96 308 aa1.89□□□□□ -2.11
SMCHD1-206ENST00000581631 UNQ9370/PRO34162Q6UXP9 181 aa1.89□□□□□ -2.11
SMCHD1-206ENST00000581631 RNF165Q6ZSG1 346 aa1.89□□□□□ -2.11
SMCHD1-206ENST00000581631 MTURNQ8N3F0 131 aa1.89□□□□□ -2.11
SMCHD1-206ENST00000581631 DNAJA4Q8WW22 397 aaPredicted RBP1.89□□□□□ -2.11
SMCHD1-206ENST00000581631 FCGR1BQ92637 280 aa1.89□□□□□ -2.11
SMCHD1-206ENST00000581631 RPUSD4Q96CM3 377 aaKnown RBP1.89□□□□□ -2.11
SMCHD1-206ENST00000581631 MS4A14Q96JA4 679 aa1.89□□□□□ -2.11
SMCHD1-206ENST00000581631 CYP2S1Q96SQ9 504 aa1.89□□□□□ -2.11
SMCHD1-206ENST00000581631 RUFY1Q96T51 708 aa1.89□□□□□ -2.11
SMCHD1-206ENST00000581631 FEM1AQ9BSK4 669 aa1.89□□□□□ -2.11
SMCHD1-206ENST00000581631 SRXN1Q9BYN0 137 aa1.89□□□□□ -2.11
SMCHD1-206ENST00000581631 NMNAT2Q9BZQ4 307 aa1.89□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms