RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 LIMS1P48059 325 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 SESN3P58005 492 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 TAS2R41P59536 307 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 COPZ1P61923 177 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 SKP2Q13309 424 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 NPTX1Q15818 432 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 PPP4R4Q6NUP7 873 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 APOOLQ6UXV4 268 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 DEF8Q6ZN54 512 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 C16orf47Q6ZP98 133 aaPredicted RBP13.99□□□□□ -0.17
SS18-215ENST00000580642 ZBTB49Q6ZSB9 765 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 GALNT16Q8N428 558 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 GRHL3Q8TE85 626 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 DNAJC9Q8WXX5 260 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 CNOT9Q92600 299 aaKnown RBP13.99□□□□□ -0.17
SS18-215ENST00000580642 NTNG2Q96CW9 530 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 DTNBP1Q96EV8 351 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 GABARAPL1Q9H0R8 117 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 SEMA6AQ9H2E6 1030 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 CCDC86Q9H6F5 360 aaKnown RBP13.99□□□□□ -0.17
SS18-215ENST00000580642 NMNAT1Q9HAN9 279 aaPredicted RBP13.99□□□□□ -0.17
SS18-215ENST00000580642 C12orf10Q9HB07 376 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 ACER3Q9NUN7 267 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 STMN3Q9NZ72 180 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 PCDHGB6Q9Y5F9 930 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 LYVE1Q9Y5Y7 322 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 TRAPPC13A5PLN9 417 aa13.98□□□□□ -0.17
SS18-215ENST00000580642 CLDN24A6NM45 220 aa13.98□□□□□ -0.17
SS18-215ENST00000580642 FFAR1O14842 300 aa13.98□□□□□ -0.17
SS18-215ENST00000580642 NKX2-8O15522 239 aa13.98□□□□□ -0.17
SS18-215ENST00000580642 KLK10O43240 276 aa13.98□□□□□ -0.17
SS18-215ENST00000580642 OR6B1O95007 311 aa13.98□□□□□ -0.17
SS18-215ENST00000580642 UBTFL6P0CB48 400 aaPredicted RBP13.98□□□□□ -0.17
SS18-215ENST00000580642 ZNF23P17027 643 aa13.98□□□□□ -0.17
SS18-215ENST00000580642 ACAA2P42765 397 aaKnown RBP13.98□□□□□ -0.17
SS18-215ENST00000580642 CYB561P49447 251 aa13.98□□□□□ -0.17
SS18-215ENST00000580642 GAS1P54826 345 aa13.98□□□□□ -0.17
SS18-215ENST00000580642 SPIBQ01892 262 aa13.98□□□□□ -0.17
SS18-215ENST00000580642 PLAURQ03405 335 aa13.98□□□□□ -0.17
SS18-215ENST00000580642 EPS8Q12929 822 aa13.98□□□□□ -0.17
SS18-215ENST00000580642 TRAM2Q15035 370 aa13.98□□□□□ -0.17
SS18-215ENST00000580642 ENTPD8Q5MY95 495 aa13.98□□□□□ -0.17
SS18-215ENST00000580642 AGAP7PQ5VUJ5 663 aa13.98□□□□□ -0.17
SS18-215ENST00000580642 SLC22A10Q63ZE4 541 aa13.98□□□□□ -0.17
SS18-215ENST00000580642 HMGN2P46Q86SG4 172 aa13.98□□□□□ -0.17
SS18-215ENST00000580642 RBM45Q8IUH3 476 aaKnown RBP13.98□□□□□ -0.17
SS18-215ENST00000580642 LACC1Q8IV20 430 aa13.98□□□□□ -0.17
SS18-215ENST00000580642 OR10G3Q8NGC4 313 aa13.98□□□□□ -0.17
SS18-215ENST00000580642 OR4C15Q8NGM1 316 aa13.98□□□□□ -0.17
SS18-215ENST00000580642 OR5W2Q8NH69 310 aa13.98□□□□□ -0.17
SS18-215ENST00000580642 DNAJA4Q8WW22 397 aaPredicted RBP13.98□□□□□ -0.17
SS18-215ENST00000580642 MPP4Q96JB8 637 aa13.98□□□□□ -0.17
SS18-215ENST00000580642 RDH12Q96NR8 316 aa13.98□□□□□ -0.17
SS18-215ENST00000580642 AGAP4Q96P64 663 aa13.98□□□□□ -0.17
SS18-215ENST00000580642 NODALQ96S42 347 aa13.98□□□□□ -0.17
SS18-215ENST00000580642 RBM4BQ9BQ04 359 aaKnown RBP13.98□□□□□ -0.17
SS18-215ENST00000580642 RBM4Q9BWF3 364 aaKnown RBP13.98□□□□□ -0.17
SS18-215ENST00000580642 ANGPTL4Q9BY76 406 aa13.98□□□□□ -0.17
SS18-215ENST00000580642 ING2Q9H160 280 aa13.98□□□□□ -0.17
SS18-215ENST00000580642 METTL7AQ9H8H3 244 aa13.98□□□□□ -0.17
SS18-215ENST00000580642 USE1Q9NZ43 259 aa13.98□□□□□ -0.17
SS18-215ENST00000580642 FLRT3Q9NZU0 649 aa13.98□□□□□ -0.17
SS18-215ENST00000580642 TMCC3Q9ULS5 477 aa13.98□□□□□ -0.17
SS18-215ENST00000580642 OAZ3Q9UMX2 235 aa13.98□□□□□ -0.17
SS18-215ENST00000580642 CHCHD2Q9Y6H1 151 aaPredicted RBP13.98□□□□□ -0.17
SS18-215ENST00000580642 ADAM10O14672 748 aa13.97□□□□□ -0.17
SS18-215ENST00000580642 RRP8O43159 456 aaKnown RBP13.97□□□□□ -0.17
SS18-215ENST00000580642 TLX3O43711 291 aaPredicted RBP13.97□□□□□ -0.17
SS18-215ENST00000580642 TPST2O60704 377 aa13.97□□□□□ -0.17
SS18-215ENST00000580642 SEMA7AO75326 666 aa13.97□□□□□ -0.17
SS18-215ENST00000580642 CYP7B1O75881 506 aa13.97□□□□□ -0.17
SS18-215ENST00000580642 RASAL1O95294 804 aa13.97□□□□□ -0.17
SS18-215ENST00000580642 LINGO3P0C6S8 592 aa13.97□□□□□ -0.17
SS18-215ENST00000580642 PGCP20142 388 aa13.97□□□□□ -0.17
SS18-215ENST00000580642 PEX2P28328 305 aa13.97□□□□□ -0.17
SS18-215ENST00000580642 IFNGR2P38484 337 aa13.97□□□□□ -0.17
SS18-215ENST00000580642 CASP3P42574 277 aa13.97□□□□□ -0.17
SS18-215ENST00000580642 P2RX1P51575 399 aa13.97□□□□□ -0.17
SS18-215ENST00000580642 CDH12P55289 794 aa13.97□□□□□ -0.17
SS18-215ENST00000580642 DLX5P56178 289 aa13.97□□□□□ -0.17
SS18-215ENST00000580642 PIN1Q13526 163 aaPredicted RBP13.97□□□□□ -0.17
SS18-215ENST00000580642 CBFBQ13951 182 aa13.97□□□□□ -0.17
SS18-215ENST00000580642 CD226Q15762 336 aa13.97□□□□□ -0.17
SS18-215ENST00000580642 MICAQ29983 383 aa13.97□□□□□ -0.17
SS18-215ENST00000580642 DCST1Q5T197 706 aa13.97□□□□□ -0.17
SS18-215ENST00000580642 WBP2NLQ6ICG8 309 aa13.97□□□□□ -0.17
SS18-215ENST00000580642 ULK3Q6PHR2 472 aa13.97□□□□□ -0.17
SS18-215ENST00000580642 ISLR2Q6UXK2 745 aa13.97□□□□□ -0.17
SS18-215ENST00000580642 PLEKHM3Q6ZWE6 761 aa13.97□□□□□ -0.17
SS18-215ENST00000580642 MARCH3Q86UD3 253 aa13.97□□□□□ -0.17
SS18-215ENST00000580642 RNF113BQ8IZP6 322 aaKnown RBP13.97□□□□□ -0.17
SS18-215ENST00000580642 ICA1LQ8NDH6 482 aa13.97□□□□□ -0.17
SS18-215ENST00000580642 B4GALNT2Q8NHY0 566 aa13.97□□□□□ -0.17
SS18-215ENST00000580642 ADAMTS16Q8TE57 1224 aa13.97□□□□□ -0.17
SS18-215ENST00000580642 NRG4Q8WWG1 115 aa13.97□□□□□ -0.17
SS18-215ENST00000580642 SLC38A4Q969I6 547 aa13.97□□□□□ -0.17
SS18-215ENST00000580642 HS6ST2Q96MM7 605 aa13.97□□□□□ -0.17
SS18-215ENST00000580642 UTP23Q9BRU9 249 aaKnown RBP13.97□□□□□ -0.17
SS18-215ENST00000580642 KLRF1Q9NZS2 232 aa13.97□□□□□ -0.17
SS18-215ENST00000580642 SELENONQ9NZV5 590 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms