RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 ZNF117Q03924 483 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 SKP2Q13309 424 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 MDGA2Q7Z553 956 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 GRAMD2AQ8IUY3 354 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 GALNT4Q8N4A0 578 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 TMEM156Q8N614 296 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 CLEC1AQ8NC01 280 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 FAM71CQ8NEG0 241 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 DUSP19Q8WTR2 217 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 EME1Q96AY2 570 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 MAN2C1Q9NTJ4 1040 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 STMN3Q9NZ72 180 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 ACAD8Q9UKU7 415 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 SAMHD1Q9Y3Z3 626 aaKnown RBP22.96■■□□□ 1.27
SHMT1-207ENST00000580002 PCNX3Q9H6A9 2034 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 CNTRLQ7Z7A1 2325 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 GTPBP1O00178 669 aaKnown RBP22.96■■□□□ 1.27
SHMT1-207ENST00000580002 NDUFB5O43674 189 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 WISP1O95388 367 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 NGFRP08138 427 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 UBL4AP11441 157 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 PTNP21246 168 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 GCKP35557 465 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 ADH7P40394 386 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 GAS1P54826 345 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 PSPHP78330 225 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 EXOC3L2Q2M3D2 409 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 PRAMEF20Q5VT98 475 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 ZNF227Q86WZ6 799 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 CBR4Q8N4T8 237 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 ZNF248Q8NDW4 579 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 OR4C15Q8NGM1 316 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 ZNF347Q96SE7 839 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 LHPPQ9H008 270 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 ING2Q9H160 280 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 NCOR2Q9Y618 2525 aa22.95■■□□□ 1.26
SHMT1-207ENST00000580002 TRBV4-1A0A0J9YWV2 114 aa22.95■■□□□ 1.26
SHMT1-207ENST00000580002 G3V3Y1 287 aa22.95■■□□□ 1.26
SHMT1-207ENST00000580002 TNFRSF11BO00300 401 aa22.95■■□□□ 1.26
SHMT1-207ENST00000580002 E2F6O75461 281 aa22.95■■□□□ 1.26
SHMT1-207ENST00000580002 CCL3P10147 92 aa22.95■■□□□ 1.26
SHMT1-207ENST00000580002 CDC20Q12834 499 aa22.95■■□□□ 1.26
SHMT1-207ENST00000580002 OR1Q1Q15612 314 aa22.95■■□□□ 1.26
SHMT1-207ENST00000580002 DEFB109BQ30KR1 87 aa22.95■■□□□ 1.26
SHMT1-207ENST00000580002 OTUD3Q5T2D3 398 aaPredicted RBP22.95■■□□□ 1.26
SHMT1-207ENST00000580002 OPN5Q6U736 354 aa22.95■■□□□ 1.26
SHMT1-207ENST00000580002 LINC00696Q6ZRV3 163 aa22.95■■□□□ 1.26
SHMT1-207ENST00000580002 GALNT16Q8N428 558 aa22.95■■□□□ 1.26
SHMT1-207ENST00000580002 ADAMTS16Q8TE57 1224 aa22.95■■□□□ 1.26
SHMT1-207ENST00000580002 RNF138Q8WVD3 245 aa22.95■■□□□ 1.26
SHMT1-207ENST00000580002 THAP4Q8WY91 577 aa22.95■■□□□ 1.26
SHMT1-207ENST00000580002 TTC9Q92623 222 aa22.95■■□□□ 1.26
SHMT1-207ENST00000580002 TMCO6Q96DC7 493 aa22.95■■□□□ 1.26
SHMT1-207ENST00000580002 CCNL2Q96S94 520 aaPredicted RBP22.95■■□□□ 1.26
SHMT1-207ENST00000580002 REEP1Q9H902 201 aa22.95■■□□□ 1.26
SHMT1-207ENST00000580002 SMURF2Q9HAU4 748 aa22.95■■□□□ 1.26
SHMT1-207ENST00000580002 PLA2G3Q9NZ20 509 aa22.95■■□□□ 1.26
SHMT1-207ENST00000580002 EML6Q6ZMW3 1958 aa22.94■■□□□ 1.26
SHMT1-207ENST00000580002 A0A1W2PQD3 144 aa22.94■■□□□ 1.26
SHMT1-207ENST00000580002 ZNF26P17031 533 aaPredicted RBP22.94■■□□□ 1.26
SHMT1-207ENST00000580002 HOXB6P17509 224 aaKnown RBP22.94■■□□□ 1.26
SHMT1-207ENST00000580002 CASP3P42574 277 aa22.94■■□□□ 1.26
SHMT1-207ENST00000580002 LIMS1P48059 325 aa22.94■■□□□ 1.26
SHMT1-207ENST00000580002 KCNAB2Q13303 367 aa22.94■■□□□ 1.26
SHMT1-207ENST00000580002 SEC23BQ15437 767 aa22.94■■□□□ 1.26
SHMT1-207ENST00000580002 MEP1AQ16819 746 aa22.94■■□□□ 1.26
SHMT1-207ENST00000580002 CMIPQ8IY22 773 aa22.94■■□□□ 1.26
SHMT1-207ENST00000580002 PRRC1Q96M27 445 aa22.94■■□□□ 1.26
SHMT1-207ENST00000580002 RASSF4Q9H2L5 321 aa22.94■■□□□ 1.26
SHMT1-207ENST00000580002 ARMC7Q9H6L4 198 aa22.94■■□□□ 1.26
SHMT1-207ENST00000580002 SLC35A3Q9Y2D2 325 aa22.94■■□□□ 1.26
SHMT1-207ENST00000580002 ZNF891A8MT65 544 aaPredicted RBP22.94■■□□□ 1.26
SHMT1-207ENST00000580002 ZNF264O43296 627 aa22.94■■□□□ 1.26
SHMT1-207ENST00000580002 HCRTR2O43614 444 aa22.94■■□□□ 1.26
SHMT1-207ENST00000580002 EIF2S3P41091 472 aaKnown RBP22.94■■□□□ 1.26
SHMT1-207ENST00000580002 TMED10P49755 219 aaKnown RBP22.94■■□□□ 1.26
SHMT1-207ENST00000580002 CCR4P51679 360 aa22.94■■□□□ 1.26
SHMT1-207ENST00000580002 TAS2R41P59536 307 aa22.94■■□□□ 1.26
SHMT1-207ENST00000580002 EPS8Q12929 822 aa22.94■■□□□ 1.26
SHMT1-207ENST00000580002 TOMM34Q15785 309 aaPredicted RBP22.94■■□□□ 1.26
SHMT1-207ENST00000580002 JMJD6Q6NYC1 403 aaPredicted RBP22.94■■□□□ 1.26
SHMT1-207ENST00000580002 PLEKHM3Q6ZWE6 761 aa22.94■■□□□ 1.26
SHMT1-207ENST00000580002 STK32CQ86UX6 486 aa22.94■■□□□ 1.26
SHMT1-207ENST00000580002 NKAIN4Q8IVV8 208 aa22.94■■□□□ 1.26
SHMT1-207ENST00000580002 SNIP1Q8TAD8 396 aaKnown RBP22.94■■□□□ 1.26
SHMT1-207ENST00000580002 PROK2Q9HC23 129 aa22.94■■□□□ 1.26
SHMT1-207ENST00000580002 HPF1Q9NWY4 346 aa22.94■■□□□ 1.26
SHMT1-207ENST00000580002 ACACAQ13085 2346 aa22.93■■□□□ 1.26
SHMT1-207ENST00000580002 GADD45GO95257 159 aa22.93■■□□□ 1.26
SHMT1-207ENST00000580002 LYPD3O95274 346 aa22.93■■□□□ 1.26
SHMT1-207ENST00000580002 ADRB1P08588 477 aa22.93■■□□□ 1.26
SHMT1-207ENST00000580002 VHLP40337 213 aa22.93■■□□□ 1.26
SHMT1-207ENST00000580002 CCL11P51671 97 aa22.93■■□□□ 1.26
SHMT1-207ENST00000580002 ZBTB49Q6ZSB9 765 aa22.93■■□□□ 1.26
SHMT1-207ENST00000580002 GDF7Q7Z4P5 450 aa22.93■■□□□ 1.26
SHMT1-207ENST00000580002 TMCO5AQ8N6Q1 288 aa22.93■■□□□ 1.26
SHMT1-207ENST00000580002 PIK3C3Q8NEB9 887 aa22.93■■□□□ 1.26
SHMT1-207ENST00000580002 OR5K1Q8NHB7 308 aa22.93■■□□□ 1.26
SHMT1-207ENST00000580002 DHRS1Q96LJ7 313 aa22.93■■□□□ 1.26
SHMT1-207ENST00000580002 FNDC11Q9BVV2 318 aa22.93■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms