RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 LIN52Q52LA3 116 aa7.8□□□□□ -1.16
NUP88-211ENST00000575976 ZNF311Q5JNZ3 666 aa7.8□□□□□ -1.16
NUP88-211ENST00000575976 INTS11Q5TA45 600 aaKnown RBP7.8□□□□□ -1.16
NUP88-211ENST00000575976 CBLN3Q6UW01 205 aa7.8□□□□□ -1.16
NUP88-211ENST00000575976 FAM180AQ6UWF9 173 aa7.8□□□□□ -1.16
NUP88-211ENST00000575976 BNC2Q6ZN30 1099 aaPredicted RBP7.8□□□□□ -1.16
NUP88-211ENST00000575976 ZNF836Q6ZNA1 936 aa7.8□□□□□ -1.16
NUP88-211ENST00000575976 CCDC80Q76M96 950 aa7.8□□□□□ -1.16
NUP88-211ENST00000575976 SLC22A16Q86VW1 577 aa7.8□□□□□ -1.16
NUP88-211ENST00000575976 KRT73Q86Y46 540 aa7.8□□□□□ -1.16
NUP88-211ENST00000575976 MISPQ8IVT2 679 aa7.8□□□□□ -1.16
NUP88-211ENST00000575976 SLC30A8Q8IWU4 369 aa7.8□□□□□ -1.16
NUP88-211ENST00000575976 FADS6Q8N9I5 356 aa7.8□□□□□ -1.16
NUP88-211ENST00000575976 FAM156AQ8NDB6 213 aa7.8□□□□□ -1.16
NUP88-211ENST00000575976 OR4K17Q8NGC6 315 aa7.8□□□□□ -1.16
NUP88-211ENST00000575976 OIT3Q8WWZ8 545 aa7.8□□□□□ -1.16
NUP88-211ENST00000575976 CNOT9Q92600 299 aaKnown RBP7.8□□□□□ -1.16
NUP88-211ENST00000575976 SH3YL1Q96HL8 342 aaPredicted RBP7.8□□□□□ -1.16
NUP88-211ENST00000575976 DEFB127Q9H1M4 99 aa7.8□□□□□ -1.16
NUP88-211ENST00000575976 TSPAN10Q9H1Z9 355 aaPredicted RBP7.8□□□□□ -1.16
NUP88-211ENST00000575976 ZNF703Q9H7S9 590 aaPredicted RBP7.8□□□□□ -1.16
NUP88-211ENST00000575976 ASF1BQ9NVP2 202 aa7.8□□□□□ -1.16
NUP88-211ENST00000575976 RLIMQ9NVW2 624 aa7.8□□□□□ -1.16
NUP88-211ENST00000575976 CD300AQ9UGN4 299 aa7.8□□□□□ -1.16
NUP88-211ENST00000575976 FBXL2Q9UKC9 423 aa7.8□□□□□ -1.16
NUP88-211ENST00000575976 ZNF232Q9UNY5 417 aa7.8□□□□□ -1.16
NUP88-211ENST00000575976 ZNF443Q9Y2A4 671 aaPredicted RBP7.8□□□□□ -1.16
NUP88-211ENST00000575976 CARD8Q9Y2G2 431 aa7.8□□□□□ -1.16
NUP88-211ENST00000575976 C15orf41Q9Y2V0 281 aa7.8□□□□□ -1.16
NUP88-211ENST00000575976 IFT52Q9Y366 437 aa7.8□□□□□ -1.16
NUP88-211ENST00000575976 CHST2Q9Y4C5 530 aa7.8□□□□□ -1.16
NUP88-211ENST00000575976 ABCA12Q86UK0 2595 aa7.8□□□□□ -1.16
NUP88-211ENST00000575976 UBR5O95071 2799 aaPredicted RBP7.8□□□□□ -1.16
NUP88-211ENST00000575976 IGLV3-32A0A0A0MS00 114 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 NPIPA5E9PKD4 350 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 EBAG9O00559 213 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 CXCR6O00574 342 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 TFECO14948 347 aaPredicted RBP7.79□□□□□ -1.16
NUP88-211ENST00000575976 GSTA4O15217 222 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 GYG2O15488 501 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 ZNF264O43296 627 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 SUV39H1O43463 412 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 HCRTR2O43614 444 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 TPST1O60507 370 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 EIF4E2O60573 245 aaKnown RBP7.79□□□□□ -1.16
NUP88-211ENST00000575976 DNAJA2O60884 412 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 SERPINB7O75635 380 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 TRAPPC6AO75865 159 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 ATP5HO75947 161 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 EPPINO95925 133 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 OPN1SWP03999 348 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 CELA3AP09093 270 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 UBTFL6P0CB48 400 aaPredicted RBP7.79□□□□□ -1.16
NUP88-211ENST00000575976 HSD17B1P14061 328 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 NCK1P16333 377 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 ZNF24P17028 368 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 ENDOUP21128 410 aaKnown RBP7.79□□□□□ -1.16
NUP88-211ENST00000575976 GDF1P27539 372 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 MSX1P28360 303 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 KDELR2P33947 212 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 P2RX1P51575 399 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 CRYBA2P53672 197 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 ZNF117Q03924 483 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 DMTNQ08495 405 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 SLC10A1Q14973 349 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 LARS2Q15031 903 aaKnown RBP7.79□□□□□ -1.16
NUP88-211ENST00000575976 TOMM20Q15388 145 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 GLIPR1L2Q4G1C9 344 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 DNAL1Q4LDG9 190 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 SAMD4BQ5PRF9 694 aaKnown RBP7.79□□□□□ -1.16
NUP88-211ENST00000575976 MRPL2Q5T653 305 aaKnown RBP7.79□□□□□ -1.16
NUP88-211ENST00000575976 ZNF324BQ6AW86 544 aaPredicted RBP7.79□□□□□ -1.16
NUP88-211ENST00000575976 GLYATQ6IB77 296 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 DHRS4L2Q6PKH6 230 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 EIF3MQ7L2H7 374 aaKnown RBP7.79□□□□□ -1.16
NUP88-211ENST00000575976 PATL1Q86TB9 770 aaKnown RBP7.79□□□□□ -1.16
NUP88-211ENST00000575976 SIAH3Q8IW03 269 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 CMIPQ8IY22 773 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 CLIP4Q8N3C7 705 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 FAM109AQ8N4B1 249 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 SMYD1Q8NB12 490 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 FAM71CQ8NEG0 241 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 B4GALNT2Q8NHY0 566 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 SLC26A7Q8TE54 656 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 FAR1Q8WVX9 515 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 FIG4Q92562 907 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 TAMM41Q96BW9 452 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 ARSGQ96EG1 525 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 ZNF607Q96SK3 696 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 BTBD10Q9BSF8 475 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 THTPAQ9BU02 230 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 SPATA5L1Q9BVQ7 753 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 LAT2Q9GZY6 243 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 UBQLN3Q9H347 655 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 CACYBPQ9HB71 228 aaKnown RBP7.79□□□□□ -1.16
NUP88-211ENST00000575976 DNAJB12Q9NXW2 375 aaKnown RBP7.79□□□□□ -1.16
NUP88-211ENST00000575976 B4GALT7Q9UBV7 327 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 SEC14L3Q9UDX4 400 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 EGFL7Q9UHF1 273 aa7.79□□□□□ -1.16
NUP88-211ENST00000575976 ICAM5Q9UMF0 924 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms