RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 NNATQ16517 81 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 HBMQ6B0K9 141 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 C11orf88Q6PI97 169 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 UBE3DQ7Z6J8 389 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 LINC01555Q8NAE3 123 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 OR5M3Q8NGP4 307 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 OTUB2Q96DC9 234 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 COQ10AQ96MF6 247 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 LHX9Q9NQ69 397 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 MARK1Q9P0L2 795 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 C1QTNF3-AMACRE9PGA6 284 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 PTHLHP12272 177 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 FGF9P31371 208 aaPredicted RBP13.5□□□□□ -0.25
VPS35-210ENST00000568784 STAT5AP42229 794 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 SOX2P48431 317 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 PUS10Q3MIT2 529 aaKnown RBP13.5□□□□□ -0.25
VPS35-210ENST00000568784 C17orf47Q8NEP4 570 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 OR8K3Q8NH51 312 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 GHSRQ92847 366 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 ZNF559Q9BR84 538 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 MED18Q9BUE0 208 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 GPR174Q9BXC1 333 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 ZNF69Q9UC07 566 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 DPP7Q9UHL4 492 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 CASC3O15234 703 aaKnown RBP13.5□□□□□ -0.25
VPS35-210ENST00000568784 ADH1CP00326 375 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 PDGFAP04085 211 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 EPCAMP16422 314 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 HTR1FP30939 366 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 EPHA5P54756 1037 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 PRDX1Q06830 199 aaKnown RBP13.5□□□□□ -0.25
VPS35-210ENST00000568784 GXYLT1Q4G148 440 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 FAAP20Q6NZ36 180 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 ZNF620Q6ZNG0 422 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 GJD3Q8N144 294 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 ZNF527Q8NB42 609 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 SIPA1Q96FS4 1042 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 ENKD1Q9H0I2 346 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 RANBP3Q9H6Z4 567 aaPredicted RBP13.5□□□□□ -0.25
VPS35-210ENST00000568784 PELI2Q9HAT8 420 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 CALML5Q9NZT1 146 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 CBLCQ9ULV8 474 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 M0R233 179 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 MAN2B1O00754 1011 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 VEGFDO43915 354 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 EDNRAP25101 427 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 CCR4P51679 360 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 FUT5Q11128 374 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 CRMP1Q14194 572 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 CNKSR3Q6P9H4 555 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 KANSL1Q7Z3B3 1105 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 OR4D9Q8NGE8 314 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 LCN9Q8WX39 176 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 WDR34Q96EX3 536 aa13.5□□□□□ -0.25
VPS35-210ENST00000568784 CCDC86Q9H6F5 360 aaKnown RBP13.5□□□□□ -0.25
VPS35-210ENST00000568784 ANKRD61A6NGH8 418 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 PCP4L1A6NKN8 68 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 FLRT2O43155 660 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 PROS1P07225 676 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 ATP5A1P25705 553 aaKnown RBP13.49□□□□□ -0.25
VPS35-210ENST00000568784 BMP8BP34820 402 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 MAGEB1P43366 347 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 CDK3Q00526 305 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 REEP5Q00765 189 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 LAMTOR1Q6IAA8 161 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 METAP1DQ6UB28 335 aaPredicted RBP13.49□□□□□ -0.25
VPS35-210ENST00000568784 BMP8AQ7Z5Y6 402 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 LRRC56Q8IYG6 542 aaPredicted RBP13.49□□□□□ -0.25
VPS35-210ENST00000568784 DUSP18Q8NEJ0 188 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 SDR9C7Q8NEX9 313 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 ABHD4Q8TB40 342 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 AUNIPQ9H7T9 357 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 HCN3Q9P1Z3 774 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 PHF11Q9UIL8 331 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 CDHR4A6H8M9 788 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 LDB3O75112 727 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 TSPAN9O75954 239 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 IFNA7P01567 189 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 CEBPBP17676 345 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 TM4SF4P48230 202 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 HSF2Q03933 536 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 ZNF155Q12901 538 aaPredicted RBP13.49□□□□□ -0.25
VPS35-210ENST00000568784 ELAVL3Q14576 367 aaKnown RBP13.49□□□□□ -0.25
VPS35-210ENST00000568784 ZNF234Q14588 700 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 FRRS1Q6ZNA5 592 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 C1orf216Q8TAB5 229 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 GINS4Q9BRT9 223 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 TMEM138Q9NPI0 162 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 CREBZFQ9NS37 354 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 C20orf141Q9NUB4 165 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 SIDT1Q9NXL6 827 aaKnown RBP13.49□□□□□ -0.25
VPS35-210ENST00000568784 SPHK1Q9NYA1 384 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 RCE1Q9Y256 329 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 LRRN3E7EW58 273 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 ALDOBP05062 364 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 LCN1P31025 176 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 OMPP47874 163 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 CENPAP49450 140 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 RAB28P51157 221 aa13.49□□□□□ -0.25
VPS35-210ENST00000568784 TMEM44Q2T9K0 475 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms