RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 C22orf34Q6ZV56 151 aa15.41■□□□□ 0.06
VPS9D1-203ENST00000563798 JADE3Q92613 823 aa15.41■□□□□ 0.06
VPS9D1-203ENST00000563798 PIGTQ969N2 578 aa15.41■□□□□ 0.06
VPS9D1-203ENST00000563798 ZIM3Q96PE6 472 aa15.41■□□□□ 0.06
VPS9D1-203ENST00000563798 PRPF18Q99633 342 aaKnown RBP15.41■□□□□ 0.06
VPS9D1-203ENST00000563798 KLHDC3Q9BQ90 382 aa15.41■□□□□ 0.06
VPS9D1-203ENST00000563798 PRRG4Q9BZD6 226 aa15.41■□□□□ 0.06
VPS9D1-203ENST00000563798 BHLHE41Q9C0J9 482 aaPredicted RBP15.41■□□□□ 0.06
VPS9D1-203ENST00000563798 OR10A4Q9H209 315 aa15.41■□□□□ 0.06
VPS9D1-203ENST00000563798 CXorf36Q9H7Y0 433 aa15.41■□□□□ 0.06
VPS9D1-203ENST00000563798 ASIC5Q9NY37 505 aa15.41■□□□□ 0.06
VPS9D1-203ENST00000563798 ICAM5Q9UMF0 924 aa15.41■□□□□ 0.06
VPS9D1-203ENST00000563798 CXCL13O43927 109 aa15.4■□□□□ 0.06
VPS9D1-203ENST00000563798 DIAPH2O60879 1101 aa15.4■□□□□ 0.06
VPS9D1-203ENST00000563798 SYNGR4O95473 234 aa15.4■□□□□ 0.06
VPS9D1-203ENST00000563798 FPR1P21462 350 aa15.4■□□□□ 0.06
VPS9D1-203ENST00000563798 ME2P23368 584 aa15.4■□□□□ 0.06
VPS9D1-203ENST00000563798 NKX6-1P78426 367 aaPredicted RBP15.4■□□□□ 0.06
VPS9D1-203ENST00000563798 ZNF117Q03924 483 aa15.4■□□□□ 0.06
VPS9D1-203ENST00000563798 IFFO1Q0D2I5 559 aa15.4■□□□□ 0.06
VPS9D1-203ENST00000563798 ACKR1Q16570 336 aa15.4■□□□□ 0.06
VPS9D1-203ENST00000563798 BIVMQ86UB2 503 aa15.4■□□□□ 0.06
VPS9D1-203ENST00000563798 FNDC5Q8NAU1 212 aa15.4■□□□□ 0.06
VPS9D1-203ENST00000563798 ZNF527Q8NB42 609 aa15.4■□□□□ 0.06
VPS9D1-203ENST00000563798 AGR3Q8TD06 166 aa15.4■□□□□ 0.06
VPS9D1-203ENST00000563798 ADAMTS15Q8TE58 950 aa15.4■□□□□ 0.06
VPS9D1-203ENST00000563798 PIK3IP1Q96FE7 263 aa15.4■□□□□ 0.06
VPS9D1-203ENST00000563798 OTUB1Q96FW1 271 aaPredicted RBP15.4■□□□□ 0.06
VPS9D1-203ENST00000563798 SH3YL1Q96HL8 342 aaPredicted RBP15.4■□□□□ 0.06
VPS9D1-203ENST00000563798 KLHL15Q96M94 604 aa15.4■□□□□ 0.06
VPS9D1-203ENST00000563798 SNX8Q9Y5X2 465 aa15.4■□□□□ 0.06
VPS9D1-203ENST00000563798 VPS13CQ709C8 3753 aa15.4■□□□□ 0.06
VPS9D1-203ENST00000563798 ETV2O00321 342 aaPredicted RBP15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 TNFSF11O14788 317 aa15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 EFNA2O43921 213 aa15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 NTN1O95631 604 aa15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 C6orf47O95873 294 aa15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 PLGP00747 810 aaPredicted RBP15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 THBDP07204 575 aa15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 PABPC4LP0CB38 370 aaKnown RBP15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 CREB1P16220 341 aa15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 ATP6V1C1P21283 382 aa15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 P2RX1P51575 399 aa15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 ATP12AP54707 1039 aa15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 CTBP2P56545 445 aa15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 EMX2Q04743 252 aa15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 MAD2L1Q13257 205 aaPredicted RBP15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 DCST2Q5T1A1 773 aa15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 HBMQ6B0K9 141 aa15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 GTF2IRD2BQ6EKJ0 949 aa15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 WDR93Q6P2C0 686 aa15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 CBLN3Q6UW01 205 aa15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 PRSS57Q6UWY2 283 aa15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 STAC2Q6ZMT1 411 aa15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 C20orf204Q6ZNR8 217 aa15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 ZNF550Q7Z398 422 aa15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 GTF2IRD2Q86UP8 949 aa15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 LILRA2Q8N149 483 aa15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 KRTCAP2Q8N6L1 136 aa15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 OSTF1Q92882 214 aa15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 C18orf12Q96KH6 178 aa15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 HS3ST6Q96QI5 342 aa15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 C1orf50Q9BV19 199 aa15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 GSX1Q9H4S2 264 aaPredicted RBP15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 GP6Q9HCN6 339 aa15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 FANCFQ9NPI8 374 aa15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 FAF1Q9UNN5 650 aaPredicted RBP15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 GPC6Q9Y625 555 aaPredicted RBP15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 KCNE3Q9Y6H6 103 aa15.39■□□□□ 0.05
VPS9D1-203ENST00000563798 H3BNH8 94 aa15.38■□□□□ 0.05
VPS9D1-203ENST00000563798 ARHGEF9O43307 516 aa15.38■□□□□ 0.05
VPS9D1-203ENST00000563798 KLF4O43474 513 aa15.38■□□□□ 0.05
VPS9D1-203ENST00000563798 CLDN8P56748 225 aa15.38■□□□□ 0.05
VPS9D1-203ENST00000563798 CARD18P57730 90 aa15.38■□□□□ 0.05
VPS9D1-203ENST00000563798 TP53BP2Q13625 1128 aa15.38■□□□□ 0.05
VPS9D1-203ENST00000563798 SLC25A53Q5H9E4 307 aa15.38■□□□□ 0.05
VPS9D1-203ENST00000563798 DDX59Q5T1V6 619 aaKnown RBP eCLIP15.38■□□□□ 0.05
VPS9D1-203ENST00000563798 AP1ARQ63HQ0 302 aa15.38■□□□□ 0.05
VPS9D1-203ENST00000563798 BHLHB9Q6PI77 547 aa15.38■□□□□ 0.05
VPS9D1-203ENST00000563798 BEND4Q6ZU67 534 aa15.38■□□□□ 0.05
VPS9D1-203ENST00000563798 MREGQ8N565 214 aa15.38■□□□□ 0.05
VPS9D1-203ENST00000563798 PHOSPHO1Q8TCT1 267 aa15.38■□□□□ 0.05
VPS9D1-203ENST00000563798 RNF128Q8TEB7 428 aa15.38■□□□□ 0.05
VPS9D1-203ENST00000563798 NUDT8Q8WV74 236 aa15.38■□□□□ 0.05
VPS9D1-203ENST00000563798 IGFBPL1Q8WX77 278 aa15.38■□□□□ 0.05
VPS9D1-203ENST00000563798 CPNE4Q96A23 557 aaPredicted RBP15.38■□□□□ 0.05
VPS9D1-203ENST00000563798 TUBGCP3Q96CW5 907 aa15.38■□□□□ 0.05
VPS9D1-203ENST00000563798 ARSGQ96EG1 525 aa15.38■□□□□ 0.05
VPS9D1-203ENST00000563798 DUSP26Q9BV47 211 aa15.38■□□□□ 0.05
VPS9D1-203ENST00000563798 KLHL4Q9C0H6 718 aa15.38■□□□□ 0.05
VPS9D1-203ENST00000563798 CLEC4AQ9UMR7 237 aa15.38■□□□□ 0.05
VPS9D1-203ENST00000563798 GPR52Q9Y2T5 361 aa15.38■□□□□ 0.05
VPS9D1-203ENST00000563798 RAI1Q7Z5J4 1906 aaPredicted RBP15.37■□□□□ 0.05
VPS9D1-203ENST00000563798 GJE1A6NN92 205 aa15.37■□□□□ 0.05
VPS9D1-203ENST00000563798 ZNF195O14628 629 aa15.37■□□□□ 0.05
VPS9D1-203ENST00000563798 OIP5O43482 229 aa15.37■□□□□ 0.05
VPS9D1-203ENST00000563798 DNAJA2O60884 412 aa15.37■□□□□ 0.05
VPS9D1-203ENST00000563798 OPN1LWP04000 364 aa15.37■□□□□ 0.05
VPS9D1-203ENST00000563798 TUBBP07437 444 aa15.37■□□□□ 0.05
VPS9D1-203ENST00000563798 G6PDP11413 515 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms