RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 NCF4Q15080 339 aa16.6■□□□□ 0.25
COMMD4-208ENST00000563220 TRIP6Q15654 476 aaKnown RBP16.6■□□□□ 0.25
COMMD4-208ENST00000563220 NADK2Q4G0N4 442 aa16.6■□□□□ 0.25
COMMD4-208ENST00000563220 KCTD21Q4G0X4 260 aa16.6■□□□□ 0.25
COMMD4-208ENST00000563220 C6orf141Q5SZD1 244 aa16.6■□□□□ 0.25
COMMD4-208ENST00000563220 HSDL2Q6YN16 418 aa16.6■□□□□ 0.25
COMMD4-208ENST00000563220 ZNF730Q6ZMV8 503 aa16.6■□□□□ 0.25
COMMD4-208ENST00000563220 C16orf47Q6ZP98 133 aaPredicted RBP16.6■□□□□ 0.25
COMMD4-208ENST00000563220 MEX3DQ86XN8 651 aaKnown RBP16.6■□□□□ 0.25
COMMD4-208ENST00000563220 CMIPQ8IY22 773 aa16.6■□□□□ 0.25
COMMD4-208ENST00000563220 C17orf47Q8NEP4 570 aa16.6■□□□□ 0.25
COMMD4-208ENST00000563220 TSPAN14Q8NG11 270 aa16.6■□□□□ 0.25
COMMD4-208ENST00000563220 TMEM255BQ8WV15 326 aa16.6■□□□□ 0.25
COMMD4-208ENST00000563220 HSPBAP1Q96EW2 488 aa16.6■□□□□ 0.25
COMMD4-208ENST00000563220 YTHDF1Q9BYJ9 559 aaKnown RBP16.6■□□□□ 0.25
COMMD4-208ENST00000563220 POLR2J2Q9GZM3 115 aaKnown RBP16.6■□□□□ 0.25
COMMD4-208ENST00000563220 HOXD1Q9GZZ0 328 aa16.6■□□□□ 0.25
COMMD4-208ENST00000563220 POLR2J3Q9H1A7 115 aaKnown RBP16.6■□□□□ 0.25
COMMD4-208ENST00000563220 EVA1AQ9H8M9 152 aa16.6■□□□□ 0.25
COMMD4-208ENST00000563220 MRTO4Q9UKD2 239 aaKnown RBP16.6■□□□□ 0.25
COMMD4-208ENST00000563220 PTRH2Q9Y3E5 179 aaKnown RBP16.6■□□□□ 0.25
COMMD4-208ENST00000563220 C9J4A7 227 aa16.59■□□□□ 0.25
COMMD4-208ENST00000563220 CSTAP01040 98 aa16.59■□□□□ 0.25
COMMD4-208ENST00000563220 TP53P04637 393 aaPredicted RBP16.59■□□□□ 0.25
COMMD4-208ENST00000563220 OSMP13725 252 aa16.59■□□□□ 0.25
COMMD4-208ENST00000563220 ATP6V1B1P15313 513 aa16.59■□□□□ 0.25
COMMD4-208ENST00000563220 ABCD3P28288 659 aa16.59■□□□□ 0.25
COMMD4-208ENST00000563220 CRISP1P54107 249 aa16.59■□□□□ 0.25
COMMD4-208ENST00000563220 CD226Q15762 336 aa16.59■□□□□ 0.25
COMMD4-208ENST00000563220 ZSWIM7Q19AV6 140 aa16.59■□□□□ 0.25
COMMD4-208ENST00000563220 FNDC7Q5VTL7 733 aa16.59■□□□□ 0.25
COMMD4-208ENST00000563220 WDR88Q6ZMY6 472 aa16.59■□□□□ 0.25
COMMD4-208ENST00000563220 GATSQ8NAP1 163 aa16.59■□□□□ 0.25
COMMD4-208ENST00000563220 SETD9Q8NE22 299 aa16.59■□□□□ 0.25
COMMD4-208ENST00000563220 CNIH3Q8TBE1 160 aa16.59■□□□□ 0.25
COMMD4-208ENST00000563220 ACOT11Q8WXI4 607 aaPredicted RBP16.59■□□□□ 0.25
COMMD4-208ENST00000563220 OMA1Q96E52 524 aa16.59■□□□□ 0.25
COMMD4-208ENST00000563220 ZNF559Q9BR84 538 aa16.59■□□□□ 0.25
COMMD4-208ENST00000563220 C19orf25Q9UFG5 118 aaPredicted RBP16.59■□□□□ 0.25
COMMD4-208ENST00000563220 HSPE1-MOB4S4R3N1 261 aa16.59■□□□□ 0.25
COMMD4-208ENST00000563220 TMEM200CA6NKL6 621 aa16.59■□□□□ 0.25
COMMD4-208ENST00000563220 OR6B1O95007 311 aa16.59■□□□□ 0.25
COMMD4-208ENST00000563220 JMJD7P0C870 316 aa16.59■□□□□ 0.25
COMMD4-208ENST00000563220 GGT2P36268 569 aa16.59■□□□□ 0.25
COMMD4-208ENST00000563220 SLC26A5P58743 744 aa16.59■□□□□ 0.25
COMMD4-208ENST00000563220 ESRRGP62508 458 aa16.59■□□□□ 0.25
COMMD4-208ENST00000563220 TUBA4AP68366 448 aa16.59■□□□□ 0.25
COMMD4-208ENST00000563220 PLCXD2Q0VAA5 305 aa16.59■□□□□ 0.25
COMMD4-208ENST00000563220 PTGES3Q15185 160 aaKnown RBP16.59■□□□□ 0.25
COMMD4-208ENST00000563220 STPG1Q5TH74 334 aa16.59■□□□□ 0.25
COMMD4-208ENST00000563220 TMEM236Q5W0B7 351 aa16.59■□□□□ 0.25
COMMD4-208ENST00000563220 CD300LDQ6UXZ3 194 aa16.59■□□□□ 0.25
COMMD4-208ENST00000563220 TIPARPQ7Z3E1 657 aaKnown RBP16.59■□□□□ 0.25
COMMD4-208ENST00000563220 SLC34A3Q8N130 599 aa16.59■□□□□ 0.25
COMMD4-208ENST00000563220 VMP1Q96GC9 406 aa16.59■□□□□ 0.25
COMMD4-208ENST00000563220 APOL4Q9BPW4 351 aa16.59■□□□□ 0.25
COMMD4-208ENST00000563220 SPRY4Q9C004 299 aa16.59■□□□□ 0.25
COMMD4-208ENST00000563220 TMEM27Q9HBJ8 222 aa16.59■□□□□ 0.25
COMMD4-208ENST00000563220 LOC102723996A0A087X1L8 192 aa16.58■□□□□ 0.24
COMMD4-208ENST00000563220 C9orf172C9J069 976 aa16.58■□□□□ 0.24
COMMD4-208ENST00000563220 ZNF354AO60765 605 aaPredicted RBP16.58■□□□□ 0.24
COMMD4-208ENST00000563220 ICOSLGO75144 302 aa16.58■□□□□ 0.24
COMMD4-208ENST00000563220 SOX14O95416 240 aa16.58■□□□□ 0.24
COMMD4-208ENST00000563220 PTNP21246 168 aa16.58■□□□□ 0.24
COMMD4-208ENST00000563220 TBXA2RP21731 343 aa16.58■□□□□ 0.24
COMMD4-208ENST00000563220 IL12BP29460 328 aa16.58■□□□□ 0.24
COMMD4-208ENST00000563220 ADH7P40394 386 aa16.58■□□□□ 0.24
COMMD4-208ENST00000563220 OMPP47874 163 aa16.58■□□□□ 0.24
COMMD4-208ENST00000563220 ZNF550Q7Z398 422 aa16.58■□□□□ 0.24
COMMD4-208ENST00000563220 TOR1AIP2Q8NFQ8 470 aa16.58■□□□□ 0.24
COMMD4-208ENST00000563220 THAP3Q8WTV1 239 aaPredicted RBP16.58■□□□□ 0.24
COMMD4-208ENST00000563220 HDAC2Q92769 488 aaKnown RBP16.58■□□□□ 0.24
COMMD4-208ENST00000563220 SLC35B4Q969S0 331 aa16.58■□□□□ 0.24
COMMD4-208ENST00000563220 TP53INP1Q96A56 240 aa16.58■□□□□ 0.24
COMMD4-208ENST00000563220 ZPBPQ9BS86 351 aa16.58■□□□□ 0.24
COMMD4-208ENST00000563220 RTN4RQ9BZR6 473 aa16.58■□□□□ 0.24
COMMD4-208ENST00000563220 ADNPQ9H2P0 1102 aa16.58■□□□□ 0.24
COMMD4-208ENST00000563220 TRBV11-1A0A0K0K1C0 115 aa16.57■□□□□ 0.24
COMMD4-208ENST00000563220 ZAR1LA6NP61 321 aa16.57■□□□□ 0.24
COMMD4-208ENST00000563220 SCDO00767 359 aa16.57■□□□□ 0.24
COMMD4-208ENST00000563220 PLD2O14939 933 aa16.57■□□□□ 0.24
COMMD4-208ENST00000563220 OIP5O43482 229 aa16.57■□□□□ 0.24
COMMD4-208ENST00000563220 PIP5K1CO60331 668 aa16.57■□□□□ 0.24
COMMD4-208ENST00000563220 HPGDP15428 266 aa16.57■□□□□ 0.24
COMMD4-208ENST00000563220 POU1F1P28069 291 aa16.57■□□□□ 0.24
COMMD4-208ENST00000563220 COX10Q12887 443 aa16.57■□□□□ 0.24
COMMD4-208ENST00000563220 MAD2L1BPQ15013 274 aaPredicted RBP16.57■□□□□ 0.24
COMMD4-208ENST00000563220 PCOLCEQ15113 449 aa16.57■□□□□ 0.24
COMMD4-208ENST00000563220 HES3Q5TGS1 186 aa16.57■□□□□ 0.24
COMMD4-208ENST00000563220 ZNF613Q6PF04 617 aa16.57■□□□□ 0.24
COMMD4-208ENST00000563220 MBOAT2Q6ZWT7 520 aa16.57■□□□□ 0.24
COMMD4-208ENST00000563220 RRM2BQ7LG56 351 aa16.57■□□□□ 0.24
COMMD4-208ENST00000563220 NRMQ8IXM6 262 aa16.57■□□□□ 0.24
COMMD4-208ENST00000563220 ENTHD1Q8IYW4 607 aa16.57■□□□□ 0.24
COMMD4-208ENST00000563220 ZNF527Q8NB42 609 aa16.57■□□□□ 0.24
COMMD4-208ENST00000563220 OR2Y1Q8NGV0 311 aa16.57■□□□□ 0.24
COMMD4-208ENST00000563220 NUBPLQ8TB37 319 aa16.57■□□□□ 0.24
COMMD4-208ENST00000563220 GNPDA2Q8TDQ7 276 aa16.57■□□□□ 0.24
COMMD4-208ENST00000563220 OIT3Q8WWZ8 545 aa16.57■□□□□ 0.24
COMMD4-208ENST00000563220 DDA1Q9BW61 102 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms