RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 CMTM5Q96DZ9 223 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 OR2B2Q9GZK3 357 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 RAD21L1Q9H4I0 556 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 EFCAB1Q9HAE3 211 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 BCL2L10Q9HD36 194 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 POLE3Q9NRF9 147 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 RLIMQ9NVW2 624 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 ABCD2Q9UBJ2 740 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 ICAM5Q9UMF0 924 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 FREM1Q5H8C1 2179 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 FLNCQ14315 2725 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 A0A1B0GTH9 108 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 KDM4EB2RXH2 506 aaPredicted RBP8.88□□□□□ -0.99
CLK3-208ENST00000562626 EFNA2O43921 213 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 TRAPPC6AO75865 159 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 SOX30O94993 753 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 NPPAP01160 153 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 IGHG3P01860 377 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 UBTFL6P0CB48 400 aaPredicted RBP8.88□□□□□ -0.99
CLK3-208ENST00000562626 PRG2P13727 222 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 EDN3P14138 238 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 IL11P20809 199 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 PCGF2P35227 344 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 GSK3BP49841 420 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 ANXA11P50995 505 aaKnown RBP8.88□□□□□ -0.99
CLK3-208ENST00000562626 CRISP3P54108 245 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 EEF1A1P68104 462 aaKnown RBP8.88□□□□□ -0.99
CLK3-208ENST00000562626 HPCAP84074 193 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 KCNC4Q03721 635 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 LIPEQ05469 1076 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 DMTNQ08495 405 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 C17orf67Q0P5P2 114 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 VMACQ2NL98 169 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 EMC4Q5J8M3 183 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 MRPL2Q5T653 305 aaKnown RBP8.88□□□□□ -0.99
CLK3-208ENST00000562626 REEP3Q6NUK4 255 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 TRPM8Q7Z2W7 1104 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 SERPINA11Q86U17 422 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 SLC22A16Q86VW1 577 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 IFNEQ86WN2 208 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 FAM156AQ8NDB6 213 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 RBM15BQ8NDT2 890 aaKnown RBP8.88□□□□□ -0.99
CLK3-208ENST00000562626 OR52P1PQ8NH57 321 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 WDR60Q8WVS4 1066 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 TAMM41Q96BW9 452 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 C1GALT1C1Q96EU7 318 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 NSL1Q96IY1 281 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 HOXD1Q9GZZ0 328 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 GID8Q9NWU2 228 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 DNAJB12Q9NXW2 375 aaKnown RBP8.88□□□□□ -0.99
CLK3-208ENST00000562626 SEC14L3Q9UDX4 400 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 CORO2BQ9UQ03 480 aa8.88□□□□□ -0.99
CLK3-208ENST00000562626 ZNF443Q9Y2A4 671 aaPredicted RBP8.88□□□□□ -0.99
CLK3-208ENST00000562626 RPH3AQ9Y2J0 694 aaPredicted RBP8.88□□□□□ -0.99
CLK3-208ENST00000562626 GPC6Q9Y625 555 aaPredicted RBP8.88□□□□□ -0.99
CLK3-208ENST00000562626 A0A0G2JPF8 293 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 PRORSD1PA6NEY8 169 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 FAM220BPB1ANY3 271 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 HNRNPCL2B2RXH8 293 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 HNRNPCL3B7ZW38 293 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 ACOT7O00154 380 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 ZNF264O43296 627 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 HCRTR2O43614 444 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 HNRNPCL1O60812 293 aaKnown RBP8.87□□□□□ -0.99
CLK3-208ENST00000562626 CBR3O75828 277 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 CYP7B1O75881 506 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 CSTAP01040 98 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 LINGO3P0C6S8 592 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 PABPC4LP0CB38 370 aaKnown RBP8.87□□□□□ -0.99
CLK3-208ENST00000562626 GKN3PP0CG01 181 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 HNRNPCL4P0DMR1 293 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 UBL4AP11441 157 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 NID1P14543 1247 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 CD247P20963 164 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 PSMA4P25789 261 aaKnown RBP8.87□□□□□ -0.99
CLK3-208ENST00000562626 ELAVL4P26378 380 aaKnown RBP8.87□□□□□ -0.99
CLK3-208ENST00000562626 DPP4P27487 766 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 MSX2P35548 267 aaPredicted RBP8.87□□□□□ -0.99
CLK3-208ENST00000562626 ADH7P40394 386 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 STARP49675 285 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 KCNJ10P78508 379 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 HOXC5Q00444 222 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 CRYZQ08257 329 aaKnown RBP8.87□□□□□ -0.99
CLK3-208ENST00000562626 ART3Q13508 389 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 SLC10A1Q14973 349 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 TOMM20Q15388 145 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 ZNF630Q2M218 657 aaPredicted RBP8.87□□□□□ -0.99
CLK3-208ENST00000562626 TMEM44Q2T9K0 475 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 EIF2S3LQ2VIR3 472 aaKnown RBP8.87□□□□□ -0.99
CLK3-208ENST00000562626 PLPPR5Q32ZL2 321 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 C6orf89Q6UWU4 347 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 PLXDC2Q6UX71 529 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 GFRALQ6UXV0 394 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 NCCRP1Q6ZVX7 275 aaPredicted RBP8.87□□□□□ -0.99
CLK3-208ENST00000562626 LACC1Q8IV20 430 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 MICU2Q8IYU8 434 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 RPRMLQ8N4K4 120 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 C11orf65Q8NCR3 313 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 ST6GALNAC3Q8NDV1 305 aa8.87□□□□□ -0.99
CLK3-208ENST00000562626 HIPK4Q8NE63 616 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms