RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 CARD8Q9Y2G2 431 aa12.32□□□□□ -0.44
SHMT2-228ENST00000557302 SPTAN1Q13813 2472 aaKnown RBP12.32□□□□□ -0.44
SHMT2-228ENST00000557302 PTPN13Q12923 2485 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 MYO7BQ6PIF6 2116 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 LOC100653049A0A140TA62 436 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 FBP2O00757 339 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 ZNF264O43296 627 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 OIP5O43482 229 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 EIF4E2O60573 245 aaKnown RBP12.31□□□□□ -0.44
SHMT2-228ENST00000557302 KRT34O76011 436 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 NUDT14O95848 222 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 CSTAP01040 98 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 HOXD4P09016 255 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-228ENST00000557302 NUDT7P0C024 238 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 GABRA1P14867 456 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 CHMP24386 653 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 PTGER4P35408 488 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 ADH7P40394 386 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 P2RX1P51575 399 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 CCR4P51679 360 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 B3GALT5-AS1P59052 145 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 FGFBP1Q14512 234 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 MAPK11Q15759 364 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 TRMT5Q32P41 509 aaKnown RBP12.31□□□□□ -0.44
SHMT2-228ENST00000557302 NDUFAF6Q330K2 333 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 RUNDC3AQ59EK9 446 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 DCST1Q5T197 706 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 GCNT6Q5T4J0 391 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 CBLN3Q6UW01 205 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 HMGN2P46Q86SG4 172 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 MTDHQ86UE4 582 aaKnown RBP12.31□□□□□ -0.44
SHMT2-228ENST00000557302 PM20D2Q8IYS1 436 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 ULK2Q8IYT8 1036 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 ZG16BQ96DA0 208 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 TMEM19Q96HH6 336 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 ANKRD27Q96NW4 1050 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 DMRTA2Q96SC8 542 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 TREX2Q9BQ50 279 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-228ENST00000557302 PIGQQ9BRB3 760 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 CPPED1Q9BRF8 314 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-228ENST00000557302 PRDM14Q9GZV8 571 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 QRSL1Q9H0R6 528 aaKnown RBP12.31□□□□□ -0.44
SHMT2-228ENST00000557302 IKZF5Q9H5V7 419 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 RUBCNLQ9H714 662 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 A4GALTQ9NPC4 353 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-228ENST00000557302 MED17Q9NVC6 651 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 ICAM5Q9UMF0 924 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 SLC35A3Q9Y2D2 325 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 L3MBTL1Q9Y468 752 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 FREM3P0C091 2139 aa12.31□□□□□ -0.44
SHMT2-228ENST00000557302 OR2M5A3KFT3 312 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 WIPF3A6NGB9 483 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 AGAP5A6NIR3 686 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 C5orf58C9J3I9 102 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 LINC01387J3KSC0 135 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 MRASO14807 208 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 ZG16O60844 167 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 CYP7B1O75881 506 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 DBIP07108 87 aaKnown RBP12.3□□□□□ -0.44
SHMT2-228ENST00000557302 RNF224P0DH78 156 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 ZNF17P17021 662 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 GPX2P18283 190 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 POU3F2P20265 443 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-228ENST00000557302 SMSP52788 366 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 KCNJ10P78508 379 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 SKP2Q13309 424 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 CYLC2Q14093 348 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-228ENST00000557302 CAPRIN1Q14444 709 aaKnown RBP12.3□□□□□ -0.44
SHMT2-228ENST00000557302 SF3B4Q15427 424 aaKnown RBP eCLIP12.3□□□□□ -0.443e-14■■■■□ 25.8
SHMT2-228ENST00000557302 RPS26P11Q5JNZ5 115 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-228ENST00000557302 C1orf185Q5T7R7 199 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 PRAMEF8Q5VWM4 474 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 PRAMEF7Q5VXH5 474 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 REP15Q6BDI9 236 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 TMEM211Q6ICI0 200 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 RPTNQ6XPR3 784 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 B3GNT6Q6ZMB0 384 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 CMIPQ8IY22 773 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 PEX5LQ8IYB4 626 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 PCYOX1LQ8NBM8 494 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 TOR1AIP2Q8NFQ8 470 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 OR5M1Q8NGP8 315 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 PHF10Q8WUB8 498 aaKnown RBP12.3□□□□□ -0.44
SHMT2-228ENST00000557302 WDR60Q8WVS4 1066 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 MAL2Q969L2 176 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 ZBTB8AQ96BR9 441 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 WDYHV1Q96HA8 205 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 THUMPD3Q9BV44 507 aaKnown RBP12.3□□□□□ -0.44
SHMT2-228ENST00000557302 LAT2Q9GZY6 243 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 CACYBPQ9HB71 228 aaKnown RBP12.3□□□□□ -0.44
SHMT2-228ENST00000557302 FAM53CQ9NYF3 392 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 MED12Q93074 2177 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 DSPPQ9NZW4 1301 aa12.3□□□□□ -0.44
SHMT2-228ENST00000557302 USP9YO00507 2555 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-228ENST00000557302 SPTBN1Q01082 2364 aaKnown RBP12.29□□□□□ -0.44
SHMT2-228ENST00000557302 A0A0G2JPF8 293 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 C7orf72A4D263 438 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 AHRRA9YTQ3 701 aa12.29□□□□□ -0.44
SHMT2-228ENST00000557302 HNRNPCL2B2RXH8 293 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms