RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 MRPL2Q5T653 305 aaKnown RBP11.67□□□□□ -0.54
SHMT2-227ENST00000557269 CCDC121Q6ZUS5 278 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 SIAH3Q8IW03 269 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 SLC30A8Q8IWU4 369 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 FAM71CQ8NEG0 241 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 GPR32P1Q8NGA4 272 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 OR10Q1Q8NGQ4 319 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 FIG4Q92562 907 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 SNRNP40Q96DI7 357 aaKnown RBP11.67□□□□□ -0.54
SHMT2-227ENST00000557269 UBQLN3Q9H347 655 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 ZNF703Q9H7S9 590 aaPredicted RBP11.67□□□□□ -0.54
SHMT2-227ENST00000557269 SDHAF3Q9NRP4 125 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.67□□□□□ -0.54
SHMT2-227ENST00000557269 DNAJB12Q9NXW2 375 aaKnown RBP11.67□□□□□ -0.54
SHMT2-227ENST00000557269 ICAM5Q9UMF0 924 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 PRPF19Q9UMS4 504 aaKnown RBP11.67□□□□□ -0.54
SHMT2-227ENST00000557269 BOKQ9UMX3 212 aaPredicted RBP11.67□□□□□ -0.54
SHMT2-227ENST00000557269 TLN1Q9Y490 2541 aaKnown RBP11.66□□□□□ -0.54
SHMT2-227ENST00000557269 CDHR4A6H8M9 788 aa11.66□□□□□ -0.54
SHMT2-227ENST00000557269 H3BNH8 94 aa11.66□□□□□ -0.54
SHMT2-227ENST00000557269 GSTA4O15217 222 aa11.66□□□□□ -0.54
SHMT2-227ENST00000557269 ZNF264O43296 627 aa11.66□□□□□ -0.54
SHMT2-227ENST00000557269 FRS3O43559 492 aa11.66□□□□□ -0.54
SHMT2-227ENST00000557269 CYP7B1O75881 506 aa11.66□□□□□ -0.54
SHMT2-227ENST00000557269 DNAJC8O75937 253 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-227ENST00000557269 ATP5HO75947 161 aa11.66□□□□□ -0.54
SHMT2-227ENST00000557269 C1QL1O75973 258 aa11.66□□□□□ -0.54
SHMT2-227ENST00000557269 PRG2P13727 222 aa11.66□□□□□ -0.54
SHMT2-227ENST00000557269 ELAVL4P26378 380 aaKnown RBP11.66□□□□□ -0.54
SHMT2-227ENST00000557269 MLLT10P55197 1068 aa11.66□□□□□ -0.54
SHMT2-227ENST00000557269 TOMM34Q15785 309 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-227ENST00000557269 INAQ16352 499 aa11.66□□□□□ -0.54
SHMT2-227ENST00000557269 DNAL1Q4LDG9 190 aa11.66□□□□□ -0.54
SHMT2-227ENST00000557269 LIN52Q52LA3 116 aa11.66□□□□□ -0.54
SHMT2-227ENST00000557269 INTS11Q5TA45 600 aaKnown RBP11.66□□□□□ -0.54
SHMT2-227ENST00000557269 RNF220Q5VTB9 566 aa11.66□□□□□ -0.54
SHMT2-227ENST00000557269 ZNF324BQ6AW86 544 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-227ENST00000557269 GLYATQ6IB77 296 aa11.66□□□□□ -0.54
SHMT2-227ENST00000557269 PGM2L1Q6PCE3 622 aa11.66□□□□□ -0.54
SHMT2-227ENST00000557269 DHRS4L2Q6PKH6 230 aa11.66□□□□□ -0.54
SHMT2-227ENST00000557269 ARSKQ6UWY0 536 aa11.66□□□□□ -0.54
SHMT2-227ENST00000557269 EIF3MQ7L2H7 374 aaKnown RBP11.66□□□□□ -0.54
SHMT2-227ENST00000557269 PATL1Q86TB9 770 aaKnown RBP11.66□□□□□ -0.54
SHMT2-227ENST00000557269 KRT73Q86Y46 540 aa11.66□□□□□ -0.54
SHMT2-227ENST00000557269 ARMC8Q8IUR7 673 aa11.66□□□□□ -0.54
SHMT2-227ENST00000557269 MISPQ8IVT2 679 aa11.66□□□□□ -0.54
SHMT2-227ENST00000557269 FAM98AQ8NCA5 519 aaKnown RBP11.66□□□□□ -0.54
SHMT2-227ENST00000557269 B4GALNT2Q8NHY0 566 aa11.66□□□□□ -0.54
SHMT2-227ENST00000557269 OIT3Q8WWZ8 545 aa11.66□□□□□ -0.54
SHMT2-227ENST00000557269 ZNF607Q96SK3 696 aa11.66□□□□□ -0.54
SHMT2-227ENST00000557269 NPAS1Q99742 590 aa11.66□□□□□ -0.54
SHMT2-227ENST00000557269 LAT2Q9GZY6 243 aa11.66□□□□□ -0.54
SHMT2-227ENST00000557269 DEFB127Q9H1M4 99 aa11.66□□□□□ -0.54
SHMT2-227ENST00000557269 LRMDAQ9H2I8 198 aa11.66□□□□□ -0.54
SHMT2-227ENST00000557269 ASF1BQ9NVP2 202 aa11.66□□□□□ -0.54
SHMT2-227ENST00000557269 SEC14L3Q9UDX4 400 aa11.66□□□□□ -0.54
SHMT2-227ENST00000557269 ZNF232Q9UNY5 417 aa11.66□□□□□ -0.54
SHMT2-227ENST00000557269 IFT52Q9Y366 437 aa11.66□□□□□ -0.54
SHMT2-227ENST00000557269 PCNX3Q9H6A9 2034 aa11.65□□□□□ -0.54
SHMT2-227ENST00000557269 TTLL8A6PVC2 850 aa11.65□□□□□ -0.54
SHMT2-227ENST00000557269 AP3D1O14617 1153 aa11.65□□□□□ -0.54
SHMT2-227ENST00000557269 ZNHIT1O43257 154 aa11.65□□□□□ -0.54
SHMT2-227ENST00000557269 ZIC3O60481 467 aa11.65□□□□□ -0.54
SHMT2-227ENST00000557269 CDC40O60508 579 aaKnown RBP eCLIP11.65□□□□□ -0.54
SHMT2-227ENST00000557269 EIF4E2O60573 245 aaKnown RBP11.65□□□□□ -0.54
SHMT2-227ENST00000557269 SERPINB7O75635 380 aa11.65□□□□□ -0.54
SHMT2-227ENST00000557269 CBR3O75828 277 aa11.65□□□□□ -0.54
SHMT2-227ENST00000557269 PDE9AO76083 593 aa11.65□□□□□ -0.54
SHMT2-227ENST00000557269 GKN3PP0CG01 181 aa11.65□□□□□ -0.54
SHMT2-227ENST00000557269 ZNF24P17028 368 aa11.65□□□□□ -0.54
SHMT2-227ENST00000557269 TCEA1P23193 301 aaKnown RBP11.65□□□□□ -0.54
SHMT2-227ENST00000557269 PRKAR1BP31321 381 aa11.65□□□□□ -0.54
SHMT2-227ENST00000557269 KCNJ5P48544 419 aa11.65□□□□□ -0.54
SHMT2-227ENST00000557269 HOXC5Q00444 222 aa11.65□□□□□ -0.54
SHMT2-227ENST00000557269 ALDH6A1Q02252 535 aaKnown RBP11.65□□□□□ -0.54
SHMT2-227ENST00000557269 LARS2Q15031 903 aaKnown RBP11.65□□□□□ -0.54
SHMT2-227ENST00000557269 SPATS1Q496A3 300 aa11.65□□□□□ -0.54
SHMT2-227ENST00000557269 LRRC23Q53EV4 343 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-227ENST00000557269 EIPR1Q53HC9 387 aa11.65□□□□□ -0.54
SHMT2-227ENST00000557269 CYBRD1Q53TN4 286 aa11.65□□□□□ -0.54
SHMT2-227ENST00000557269 CMPK2Q5EBM0 449 aa11.65□□□□□ -0.54
SHMT2-227ENST00000557269 ASRGL1Q7L266 308 aa11.65□□□□□ -0.54
SHMT2-227ENST00000557269 CMIPQ8IY22 773 aa11.65□□□□□ -0.54
SHMT2-227ENST00000557269 ARHGAP24Q8N264 748 aa11.65□□□□□ -0.54
SHMT2-227ENST00000557269 OR4K17Q8NGC6 315 aa11.65□□□□□ -0.54
SHMT2-227ENST00000557269 OR4D11Q8NGI4 311 aa11.65□□□□□ -0.54
SHMT2-227ENST00000557269 C1GALT1C1Q96EU7 318 aa11.65□□□□□ -0.54
SHMT2-227ENST00000557269 BARD1Q99728 777 aaKnown RBP11.65□□□□□ -0.54
SHMT2-227ENST00000557269 PRR14Q9BWN1 585 aa11.65□□□□□ -0.54
SHMT2-227ENST00000557269 ZDHHC11Q9H8X9 412 aa11.65□□□□□ -0.54
SHMT2-227ENST00000557269 ANAPC2Q9UJX6 822 aa11.65□□□□□ -0.54
SHMT2-227ENST00000557269 SLC35A3Q9Y2D2 325 aa11.65□□□□□ -0.54
SHMT2-227ENST00000557269 LIPGQ9Y5X9 500 aa11.65□□□□□ -0.54
SHMT2-227ENST00000557269 ZFYVE26Q68DK2 2539 aa11.65□□□□□ -0.54
SHMT2-227ENST00000557269 SHISA8B8ZZ34 492 aa11.64□□□□□ -0.55
SHMT2-227ENST00000557269 NPIPA5E9PKD4 350 aa11.64□□□□□ -0.55
SHMT2-227ENST00000557269 TFECO14948 347 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-227ENST00000557269 ARPC2O15144 300 aa11.64□□□□□ -0.55
SHMT2-227ENST00000557269 SUV39H1O43463 412 aa11.64□□□□□ -0.55
SHMT2-227ENST00000557269 TRAPPC6AO75865 159 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms