RNA–Protein interactions for RNA: ENST00000554976.5

TDP1-210, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 3,040 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-210ENST00000554976 ZNF613Q6PF04 617 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 DEPDC4Q8N2C3 294 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 RNF138Q8WVD3 245 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 ZNF524Q96C55 264 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 OR6C1Q96RD1 312 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 NAA50Q9GZZ1 169 aaKnown RBP8.2□□□□□ -1.1
TDP1-210ENST00000554976 TRIM45Q9H8W5 580 aaPredicted RBP8.2□□□□□ -1.1
TDP1-210ENST00000554976 OCIAD1Q9NX40 245 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 KLHL28Q9NXS3 571 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 PRODH2Q9UF12 536 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 RSL24D1Q9UHA3 163 aaKnown RBP8.2□□□□□ -1.1
TDP1-210ENST00000554976 SH3D21A4FU49 640 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 TRAPPC13A5PLN9 417 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 SYNDIG1LA6NDD5 238 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 CLCA1A8K7I4 914 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 TSPAN2O60636 221 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 RFPL3O75679 317 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 SOX14O95416 240 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 MT-ND2P03891 347 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 CDK1P06493 297 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 NGFRP08138 427 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 ZGLP1P0C6A0 271 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 GSTM3P21266 225 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 ALAS2P22557 587 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 TGFBR2P37173 567 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 ATP12AP54707 1039 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 ANGPT1Q15389 498 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 OCLNQ16625 522 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 C1orf189Q5VU69 101 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 MRPL14Q6P1L8 145 aaKnown RBP8.2□□□□□ -1.1
TDP1-210ENST00000554976 LANCL3Q6ZV70 420 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 PLEKHM3Q6ZWE6 761 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 GPR141Q7Z602 305 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 RANBP3LQ86VV4 465 aaPredicted RBP8.2□□□□□ -1.1
TDP1-210ENST00000554976 C17orf47Q8NEP4 570 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 OR14A16Q8NHC5 309 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 LOXL4Q96JB6 756 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 WDR77Q9BQA1 342 aaPredicted RBP8.2□□□□□ -1.1
TDP1-210ENST00000554976 MESP1Q9BRJ9 268 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 G6PC3Q9BUM1 346 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 POLDIP3Q9BY77 421 aaKnown RBP8.2□□□□□ -1.1
TDP1-210ENST00000554976 EGLN3Q9H6Z9 239 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 APMAPQ9HDC9 416 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 ACOT13Q9NPJ3 140 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 IL20Q9NYY1 176 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 RABL2AQ9UBK7 228 aaPredicted RBP8.2□□□□□ -1.1
TDP1-210ENST00000554976 TPRKBQ9Y3C4 175 aa8.2□□□□□ -1.1
TDP1-210ENST00000554976 OR6C76A6NM76 312 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 H3BMQ9 156 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 AP3D1O14617 1153 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 MPZL2O60487 215 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 INMTO95050 263 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 GP1BAP07359 652 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 TTKP33981 857 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 ARL4DP49703 201 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 RNF144AP50876 292 aaPredicted RBP8.19□□□□□ -1.1
TDP1-210ENST00000554976 PGDP52209 483 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 ZNHIT3Q15649 155 aaPredicted RBP8.19□□□□□ -1.1
TDP1-210ENST00000554976 ZSWIM7Q19AV6 140 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 ARHGAP40Q5TG30 622 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 ACSM5Q6NUN0 579 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 ZNF517Q6ZMY9 492 aaPredicted RBP8.19□□□□□ -1.1
TDP1-210ENST00000554976 ANKRD37Q7Z713 158 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 MEX3DQ86XN8 651 aaKnown RBP8.19□□□□□ -1.1
TDP1-210ENST00000554976 GPR135Q8IZ08 494 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 RNF113BQ8IZP6 322 aaKnown RBP8.19□□□□□ -1.1
TDP1-210ENST00000554976 OR1N1Q8NGS0 311 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 OR4Q3Q8NH05 313 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 OR4C3Q8NH37 302 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 SLC38A4Q969I6 547 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 FAM46AQ96IP4 442 aaKnown RBP8.19□□□□□ -1.1
TDP1-210ENST00000554976 COG8Q96MW5 612 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 ZNF559Q9BR84 538 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 CNPPD1Q9BV87 410 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 RTN4RQ9BZR6 473 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 NXF5Q9H1B4 397 aaKnown RBP8.19□□□□□ -1.1
TDP1-210ENST00000554976 TPK1Q9H3S4 243 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 SMOC1Q9H4F8 434 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 Q9N2J8 555 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 MEPEQ9NQ76 525 aaPredicted RBP8.19□□□□□ -1.1
TDP1-210ENST00000554976 C14orf105Q9NVL8 296 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 TMEM200CA6NKL6 621 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 CHP2O43745 196 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 PRKYO43930 277 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 GDF9O60383 454 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 MAKP20794 623 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 LCN1P31025 176 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 STAT5AP42229 794 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 MAP2K4P45985 399 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 TPD52P55327 224 aaPredicted RBP8.19□□□□□ -1.1
TDP1-210ENST00000554976 FOXL2P58012 376 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 SKP2Q13309 424 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 TRA2AQ13595 282 aaKnown RBP eCLIP8.19□□□□□ -1.1
TDP1-210ENST00000554976 RNLSQ5VYX0 342 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 APOOLQ6UXV4 268 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 ZNF620Q6ZNG0 422 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 FAM26EQ8N5C1 309 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 PFN4Q8NHR9 129 aa8.19□□□□□ -1.1
TDP1-210ENST00000554976 TRUB1Q8WWH5 349 aaKnown RBP8.19□□□□□ -1.1
TDP1-210ENST00000554976 SPSB2Q99619 263 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms