RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 GMNNO75496 209 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 IFNA14P01570 189 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 OPN1SWP03999 348 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 RFPL3SP0C7P2 107 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 UBTFL6P0CB48 400 aaPredicted RBP11.15□□□□□ -0.62
SHMT2-209ENST00000553949 ZNF24P17028 368 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 ME2P23368 584 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 MSX1P28360 303 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 PPIAP62937 165 aaKnown RBP11.15□□□□□ -0.62
SHMT2-209ENST00000553949 PLAURQ03405 335 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 ZNF117Q03924 483 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 BNIP2Q12982 314 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 SKP2Q13309 424 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 ZSWIM7Q19AV6 140 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 LRRC23Q53EV4 343 aaPredicted RBP11.15□□□□□ -0.62
SHMT2-209ENST00000553949 RNFT1Q5M7Z0 435 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 GLYATQ6IB77 296 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 DHRS4L2Q6PKH6 230 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 CBLN3Q6UW01 205 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 SLC22A16Q86VW1 577 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 CLIP4Q8N3C7 705 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 CISD2Q8N5K1 135 aaKnown RBP11.15□□□□□ -0.62
SHMT2-209ENST00000553949 TMEM251Q8N6I4 163 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 SMYD1Q8NB12 490 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 BHLHE22Q8NFJ8 381 aaPredicted RBP11.15□□□□□ -0.62
SHMT2-209ENST00000553949 OR4K17Q8NGC6 315 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 B4GALNT2Q8NHY0 566 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 SLC26A7Q8TE54 656 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 CNOT9Q92600 299 aaKnown RBP11.15□□□□□ -0.62
SHMT2-209ENST00000553949 FAM162AQ96A26 154 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 PINK1Q9BXM7 581 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 LAT2Q9GZY6 243 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 PCDHAC1Q9H158 963 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 DSN1Q9H410 356 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 ARMC7Q9H6L4 198 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 ZNF703Q9H7S9 590 aaPredicted RBP11.15□□□□□ -0.62
SHMT2-209ENST00000553949 DNAJB12Q9NXW2 375 aaKnown RBP11.15□□□□□ -0.62
SHMT2-209ENST00000553949 B4GALT7Q9UBV7 327 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 MAGEL2Q9UJ55 1249 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 ANAPC2Q9UJX6 822 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 ICAM5Q9UMF0 924 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 SNX13Q9Y5W8 968 aa11.15□□□□□ -0.62
SHMT2-209ENST00000553949 KMT2BQ9UMN6 2715 aaPredicted RBP11.14□□□□□ -0.63
SHMT2-209ENST00000553949 ACOT7O00154 380 aa11.14□□□□□ -0.63
SHMT2-209ENST00000553949 EIF4E2O60573 245 aaKnown RBP11.14□□□□□ -0.63
SHMT2-209ENST00000553949 CBR3O75828 277 aa11.14□□□□□ -0.63
SHMT2-209ENST00000553949 CYP7B1O75881 506 aa11.14□□□□□ -0.63
SHMT2-209ENST00000553949 CRYABP02511 175 aaKnown RBP11.14□□□□□ -0.63
SHMT2-209ENST00000553949 CD247P20963 164 aa11.14□□□□□ -0.63
SHMT2-209ENST00000553949 GDF1P27539 372 aa11.14□□□□□ -0.63
SHMT2-209ENST00000553949 MAGEA5P43359 124 aa11.14□□□□□ -0.63
SHMT2-209ENST00000553949 SUMO3P55854 103 aaPredicted RBP11.14□□□□□ -0.63
SHMT2-209ENST00000553949 ALDH6A1Q02252 535 aaKnown RBP11.14□□□□□ -0.63
SHMT2-209ENST00000553949 ELOAQ14241 798 aaKnown RBP11.14□□□□□ -0.63
SHMT2-209ENST00000553949 DUSP7Q16829 419 aa11.14□□□□□ -0.63
SHMT2-209ENST00000553949 GLIPR1L2Q4G1C9 344 aa11.14□□□□□ -0.63
SHMT2-209ENST00000553949 EIPR1Q53HC9 387 aa11.14□□□□□ -0.63
SHMT2-209ENST00000553949 CYBRD1Q53TN4 286 aa11.14□□□□□ -0.63
SHMT2-209ENST00000553949 PGM2L1Q6PCE3 622 aa11.14□□□□□ -0.63
SHMT2-209ENST00000553949 FAM180AQ6UWF9 173 aa11.14□□□□□ -0.63
SHMT2-209ENST00000553949 ASRGL1Q7L266 308 aa11.14□□□□□ -0.63
SHMT2-209ENST00000553949 COMTD1Q86VU5 262 aa11.14□□□□□ -0.63
SHMT2-209ENST00000553949 GRAMD2AQ8IUY3 354 aa11.14□□□□□ -0.63
SHMT2-209ENST00000553949 FAM109AQ8N4B1 249 aa11.14□□□□□ -0.63
SHMT2-209ENST00000553949 TMCO5AQ8N6Q1 288 aa11.14□□□□□ -0.63
SHMT2-209ENST00000553949 RASSF5Q8WWW0 418 aa11.14□□□□□ -0.63
SHMT2-209ENST00000553949 MCUR1Q96AQ8 359 aa11.14□□□□□ -0.63
SHMT2-209ENST00000553949 CCDC124Q96CT7 223 aaKnown RBP11.14□□□□□ -0.63
SHMT2-209ENST00000553949 UBQLN3Q9H347 655 aa11.14□□□□□ -0.63
SHMT2-209ENST00000553949 PTGES2Q9H7Z7 377 aa11.14□□□□□ -0.63
SHMT2-209ENST00000553949 GORASP2Q9H8Y8 452 aa11.14□□□□□ -0.63
SHMT2-209ENST00000553949 EXOSC3Q9NQT5 275 aaKnown RBP11.14□□□□□ -0.63
SHMT2-209ENST00000553949 SLC13A4Q9UKG4 626 aa11.14□□□□□ -0.63
SHMT2-209ENST00000553949 NTNG1Q9Y2I2 539 aa11.14□□□□□ -0.63
SHMT2-209ENST00000553949 SPENQ96T58 3664 aaKnown RBP11.14□□□□□ -0.63
SHMT2-209ENST00000553949 TLN1Q9Y490 2541 aaKnown RBP11.13□□□□□ -0.63
SHMT2-209ENST00000553949 ANKUB1A6NFN9 424 aa11.13□□□□□ -0.63
SHMT2-209ENST00000553949 TTLL8A6PVC2 850 aa11.13□□□□□ -0.63
SHMT2-209ENST00000553949 TFECO14948 347 aaPredicted RBP11.13□□□□□ -0.63
SHMT2-209ENST00000553949 ARPC2O15144 300 aa11.13□□□□□ -0.63
SHMT2-209ENST00000553949 TRAPPC6AO75865 159 aa11.13□□□□□ -0.63
SHMT2-209ENST00000553949 EPPINO95925 133 aa11.13□□□□□ -0.63
SHMT2-209ENST00000553949 SERPINA1P01009 418 aa11.13□□□□□ -0.63
SHMT2-209ENST00000553949 HPNP05981 417 aa11.13□□□□□ -0.63
SHMT2-209ENST00000553949 KCNJ5P48544 419 aa11.13□□□□□ -0.63
SHMT2-209ENST00000553949 P2RX1P51575 399 aa11.13□□□□□ -0.63
SHMT2-209ENST00000553949 CCR4P51679 360 aa11.13□□□□□ -0.63
SHMT2-209ENST00000553949 DSCR4P56555 118 aaPredicted RBP11.13□□□□□ -0.63
SHMT2-209ENST00000553949 TRIM25Q14258 630 aaKnown RBP11.13□□□□□ -0.63
SHMT2-209ENST00000553949 GANABQ14697 944 aaKnown RBP11.13□□□□□ -0.63
SHMT2-209ENST00000553949 TOMM20Q15388 145 aa11.13□□□□□ -0.63
SHMT2-209ENST00000553949 PRR30Q53SZ7 412 aaPredicted RBP11.13□□□□□ -0.63
SHMT2-209ENST00000553949 YTHDF3Q7Z739 585 aaKnown RBP11.13□□□□□ -0.63
SHMT2-209ENST00000553949 SIAH3Q8IW03 269 aa11.13□□□□□ -0.63
SHMT2-209ENST00000553949 ULK2Q8IYT8 1036 aa11.13□□□□□ -0.63
SHMT2-209ENST00000553949 TOR1AIP2Q8NFQ8 470 aa11.13□□□□□ -0.63
SHMT2-209ENST00000553949 GPR32P1Q8NGA4 272 aa11.13□□□□□ -0.63
SHMT2-209ENST00000553949 OR5W2Q8NH69 310 aa11.13□□□□□ -0.63
SHMT2-209ENST00000553949 SLC35B4Q969S0 331 aa11.13□□□□□ -0.63
SHMT2-209ENST00000553949 SNRNP40Q96DI7 357 aaKnown RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms