RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 MPC1LP0DKB6 136 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 CCL4P13236 92 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 HOXB9P17482 250 aaPredicted RBP7.14□□□□□ -1.27
LIMA1-216ENST00000552909 HIST1H2ADP20671 130 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 PTBP1P26599 531 aaKnown RBP eCLIP7.14□□□□□ -1.27
LIMA1-216ENST00000552909 PTPN6P29350 595 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 ETV5P41161 510 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 CDKN2CP42773 168 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 GDF5P43026 501 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 FLI1Q01543 452 aaPredicted RBP7.14□□□□□ -1.27
LIMA1-216ENST00000552909 HMGCS1Q01581 520 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 GTF2H2Q13888 395 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 PCBP2Q15366 365 aaKnown RBP eCLIP7.14□□□□□ -1.27
LIMA1-216ENST00000552909 HSD17B12Q53GQ0 312 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 ZNF57Q68EA5 555 aaPredicted RBP7.14□□□□□ -1.27
LIMA1-216ENST00000552909 GTF2H2CQ6P1K8 395 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 TMEM71Q6P5X7 295 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 SUSD1Q6UWL2 747 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 MBOAT1Q6ZNC8 495 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 PTCHD4Q6ZW05 846 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 CHMP1BQ7LBR1 199 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 OR11H4Q8NGC9 324 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 OR4D9Q8NGE8 314 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 NXPE2Q96DL1 559 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 LIN37Q96GY3 246 aaPredicted RBP7.14□□□□□ -1.27
LIMA1-216ENST00000552909 HIST1H2AHQ96KK5 128 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 C7orf34Q96L11 122 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 KCNJ15Q99712 375 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 HIST1H2AJQ99878 128 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 H2AFJQ9BTM1 129 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 SLC12A9Q9BXP2 914 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 POLR2J2Q9GZM3 115 aaKnown RBP7.14□□□□□ -1.27
LIMA1-216ENST00000552909 SAV1Q9H4B6 383 aaPredicted RBP7.14□□□□□ -1.27
LIMA1-216ENST00000552909 SDHAF2Q9NX18 166 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 ARL15Q9NXU5 204 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 TAS2R7Q9NYW3 318 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 COMMD3Q9UBI1 195 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 COPS3Q9UNS2 423 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 MRPS7Q9Y2R9 242 aaKnown RBP7.14□□□□□ -1.27
LIMA1-216ENST00000552909 KCNMB2Q9Y691 235 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 KALRNO60229 2985 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 CCDC187A0A096LP49 1063 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 FAM25EA8MYX2 175 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 GFYI3L273 518 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 WWP2O00308 870 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 FFAR3O14843 346 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 NUPL2O15504 423 aaKnown RBP7.13□□□□□ -1.27
LIMA1-216ENST00000552909 GPR42O15529 346 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 TAPBPO15533 448 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 SUV39H1O43463 412 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 DUX1O43812 170 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 TNFSF15O95150 251 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 DHFRP00374 187 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 AMD1P17707 334 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 SSTR2P30874 369 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 HSPA7P48741 367 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 AP1S2P56377 157 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 PUDPQ08623 228 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 MLLT11Q13015 90 aaPredicted RBP7.13□□□□□ -1.27
LIMA1-216ENST00000552909 C1DQ13901 141 aaKnown RBP7.13□□□□□ -1.27
LIMA1-216ENST00000552909 ZNF169Q14929 603 aaPredicted RBP7.13□□□□□ -1.27
LIMA1-216ENST00000552909 P2RY14Q15391 338 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 LGALSLQ3ZCW2 172 aaPredicted RBP7.13□□□□□ -1.27
LIMA1-216ENST00000552909 CYP27C1Q4G0S4 372 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 BCL2L15Q5TBC7 163 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 LIPKQ5VXJ0 399 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 C22orf42Q6IC83 251 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 BHLHB9Q6PI77 547 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 LRFN4Q6PJG9 635 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 WDR74Q6RFH5 385 aaPredicted RBP7.13□□□□□ -1.27
LIMA1-216ENST00000552909 RRM2BQ7LG56 351 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 OVCH2Q7RTZ1 564 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 PM20D2Q8IYS1 436 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 LGI4Q8N135 537 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 MS4A15Q8N5U1 240 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 KCT2Q8NC54 265 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 OR11H7Q8NGC8 314 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 TFGQ92734 400 aaPredicted RBP7.13□□□□□ -1.27
LIMA1-216ENST00000552909 KCTD7Q96MP8 289 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 NIPSNAP1Q9BPW8 284 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 PELOQ9BRX2 385 aaKnown RBP7.13□□□□□ -1.27
LIMA1-216ENST00000552909 WACQ9BTA9 647 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 MED18Q9BUE0 208 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 IPPKQ9H8X2 491 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 UCK1Q9HA47 277 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 SLC35C2Q9NQQ7 365 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 RLIMQ9NVW2 624 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 HPF1Q9NWY4 346 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 OCIAD1Q9NX40 245 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 SLC39A1Q9NY26 324 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 DKK4Q9UBT3 224 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 PISDQ9UG56 409 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 CLEC2DQ9UHP7 191 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 ENOPH1Q9UHY7 261 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 PADI2Q9Y2J8 665 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 LOXL2Q9Y4K0 774 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 IGSF10Q6WRI0 2623 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 SNRNP200O75643 2136 aaKnown RBP7.13□□□□□ -1.27
LIMA1-216ENST00000552909 MFSD2BA6NFX1 497 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 PRSS44E7EML9 344 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms