RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 ANKRD19PQ9H560 264 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 CCDC86Q9H6F5 360 aaKnown RBP5.04□□□□□ -1.6
LIMA1-212ENST00000552491 BEX1Q9HBH7 125 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 HMX1Q9NP08 348 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-212ENST00000552491 EMC7Q9NPA0 242 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 PRDM7Q9NQW5 492 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 PTTG3PQ9NZH4 202 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 ZNF624Q9P2J8 865 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-212ENST00000552491 FBXL4Q9UKA2 621 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 CES1P1Q9UKY3 287 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 ENTPD4Q9Y227 616 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 SPEF1Q9Y4P9 236 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 SPTBP11277 2137 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 PRRT4C9JH25 899 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 BTN3A3O00478 584 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 MAGEB4O15481 346 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-212ENST00000552491 ERI3O43414 337 aaKnown RBP5.04□□□□□ -1.6
LIMA1-212ENST00000552491 NARSO43776 548 aaKnown RBP5.04□□□□□ -1.6
LIMA1-212ENST00000552491 FZD7O75084 574 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 HPXP02790 462 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 MRPL3P09001 348 aaKnown RBP5.04□□□□□ -1.6
LIMA1-212ENST00000552491 PRG2P13727 222 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 NDUFV2P19404 249 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 MAKP20794 623 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 STOMP27105 288 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 CERS1P27544 350 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 NOS3P29474 1203 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 RBMS1P29558 406 aaKnown RBP5.04□□□□□ -1.6
LIMA1-212ENST00000552491 NTSP30990 170 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 ACSL1P33121 698 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 BMP8BP34820 402 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 ACVR1BP36896 505 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 SOX9P48436 509 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 CLCNKAP51800 687 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 RGS8P57771 180 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-212ENST00000552491 POU6F2P78424 691 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-212ENST00000552491 SHC2P98077 582 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 DPTQ07507 201 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 SLC3A1Q07837 685 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 RGS1Q08116 209 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 TGM3Q08188 693 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 FGFBP1Q14512 234 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 ARHGAP19Q14CB8 494 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 ARHGEF6Q15052 776 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 MLF2Q15773 248 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-212ENST00000552491 DECR1Q16698 335 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 C9orf64Q5T6V5 341 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 HACD4Q5VWC8 232 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 MRM1Q6IN84 353 aaKnown RBP5.04□□□□□ -1.6
LIMA1-212ENST00000552491 TMEM64Q6YI46 380 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 PLEKHM3Q6ZWE6 761 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 MBOAT2Q6ZWT7 520 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 SSX6Q7RTT6 188 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 PRSS45Q7RTY3 260 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 BMP8AQ7Z5Y6 402 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 CEACAM19Q7Z692 300 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 ACBD7Q8N6N7 88 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 ACOT4Q8N9L9 421 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-212ENST00000552491 SLC16A11Q8NCK7 471 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 NUP43Q8NFH3 380 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 OR2T33Q8NG76 320 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 OR10H4Q8NGA5 316 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 OR2A1Q8NGT9 310 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 OR5W2Q8NH69 310 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 PFN4Q8NHR9 129 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 TRMT10AQ8TBZ6 339 aaKnown RBP5.04□□□□□ -1.6
LIMA1-212ENST00000552491 DOK4Q8TEW6 326 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 THAP4Q8WY91 577 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 PTP4A1Q93096 173 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 SLC35A4Q96G79 324 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 AHCYL2Q96HN2 611 aaKnown RBP5.04□□□□□ -1.6
LIMA1-212ENST00000552491 ZNF681Q96N22 645 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 MCHR1Q99705 422 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 PRSS27Q9BQR3 290 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 TTTY10Q9BZA0 68 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 DPH1Q9BZG8 443 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 PITHD1Q9GZP4 211 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-212ENST00000552491 C20orf141Q9NUB4 165 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 NLGN3Q9NZ94 848 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 KCMF1Q9P0J7 381 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 H2AFY2Q9P0M6 372 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-212ENST00000552491 PRKAG2Q9UGJ0 569 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 SLC7A7Q9UM01 511 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 BHLHE40O14503 412 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 CDK2AP1O14519 115 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 GPR171O14626 319 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 CLEC3AO75596 197 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 SC5DO75845 299 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 WNT1P04628 370 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 HMGN1P05114 100 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 ADRB1P08588 477 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 UBL4AP11441 157 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 F3P13726 295 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 ADRB3P13945 408 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 ATF1P18846 271 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 HOXD10P28358 340 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 HSD17B2P37059 387 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 OR12D2P58182 307 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 RPA4Q13156 261 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms