RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 REEP4Q9H6H4 257 aa11.47□□□□□ -0.57
PTCH1-218ENST00000548945 LRTM1Q9HBL6 345 aa11.47□□□□□ -0.57
PTCH1-218ENST00000548945 TNFRSF12AQ9NP84 129 aa11.47□□□□□ -0.57
PTCH1-218ENST00000548945 NGBQ9NPG2 151 aa11.47□□□□□ -0.57
PTCH1-218ENST00000548945 TMED5Q9Y3A6 229 aa11.47□□□□□ -0.57
PTCH1-218ENST00000548945 GJE1A6NN92 205 aa11.46□□□□□ -0.57
PTCH1-218ENST00000548945 OVOL3O00110 214 aa11.46□□□□□ -0.57
PTCH1-218ENST00000548945 GCM2O75603 506 aaPredicted RBP11.46□□□□□ -0.57
PTCH1-218ENST00000548945 ALOX5P09917 674 aa11.46□□□□□ -0.57
PTCH1-218ENST00000548945 LINGO3P0C6S8 592 aa11.46□□□□□ -0.57
PTCH1-218ENST00000548945 ACP2P11117 423 aa11.46□□□□□ -0.57
PTCH1-218ENST00000548945 DDX5P17844 614 aaKnown RBP11.46□□□□□ -0.57
PTCH1-218ENST00000548945 ADH6P28332 368 aa11.46□□□□□ -0.57
PTCH1-218ENST00000548945 PRKAG1P54619 331 aa11.46□□□□□ -0.57
PTCH1-218ENST00000548945 ZNF844Q08AG5 666 aa11.46□□□□□ -0.57
PTCH1-218ENST00000548945 TNK1Q13470 666 aa11.46□□□□□ -0.57
PTCH1-218ENST00000548945 MLC1Q15049 377 aa11.46□□□□□ -0.57
PTCH1-218ENST00000548945 ZNF239Q16600 458 aaKnown RBP11.46□□□□□ -0.57
PTCH1-218ENST00000548945 DUSP5Q16690 384 aa11.46□□□□□ -0.57
PTCH1-218ENST00000548945 TMEM201Q5SNT2 666 aa11.46□□□□□ -0.57
PTCH1-218ENST00000548945 DNAJC14Q6Y2X3 702 aaPredicted RBP11.46□□□□□ -0.57
PTCH1-218ENST00000548945 MTERF4Q7Z6M4 381 aaKnown RBP11.46□□□□□ -0.57
PTCH1-218ENST00000548945 LILRA2Q8N149 483 aa11.46□□□□□ -0.57
PTCH1-218ENST00000548945 GABRG1Q8N1C3 465 aa11.46□□□□□ -0.57
PTCH1-218ENST00000548945 COX18Q8N8Q8 333 aa11.46□□□□□ -0.57
PTCH1-218ENST00000548945 B4GALNT2Q8NHY0 566 aa11.46□□□□□ -0.57
PTCH1-218ENST00000548945 POC1BQ8TC44 478 aa11.46□□□□□ -0.57
PTCH1-218ENST00000548945 AKAP1Q92667 903 aaKnown RBP eCLIP11.46□□□□□ -0.57
PTCH1-218ENST00000548945 STACQ99469 402 aa11.46□□□□□ -0.57
PTCH1-218ENST00000548945 NPAS1Q99742 590 aa11.46□□□□□ -0.57
PTCH1-218ENST00000548945 BTBD2Q9BX70 525 aa11.46□□□□□ -0.57
PTCH1-218ENST00000548945 TXLNGYQ9BZA5 131 aa11.46□□□□□ -0.57
PTCH1-218ENST00000548945 VIPAS39Q9H9C1 493 aa11.46□□□□□ -0.57
PTCH1-218ENST00000548945 DUSP22Q9NRW4 184 aa11.46□□□□□ -0.57
PTCH1-218ENST00000548945 ZNF446Q9NWS9 450 aa11.46□□□□□ -0.57
PTCH1-218ENST00000548945 OXSMQ9NWU1 459 aa11.46□□□□□ -0.57
PTCH1-218ENST00000548945 GIN1Q9NXP7 522 aa11.46□□□□□ -0.57
PTCH1-218ENST00000548945 RNF115Q9Y4L5 304 aa11.46□□□□□ -0.57
PTCH1-218ENST00000548945 ACTL7BQ9Y614 415 aa11.46□□□□□ -0.57
PTCH1-218ENST00000548945 ALPK2Q86TB3 2170 aa11.45□□□□□ -0.58
PTCH1-218ENST00000548945 PLIN3O60664 434 aa11.45□□□□□ -0.58
PTCH1-218ENST00000548945 CRLF1O75462 422 aa11.45□□□□□ -0.58
PTCH1-218ENST00000548945 SDC1P18827 310 aa11.45□□□□□ -0.58
PTCH1-218ENST00000548945 ASMTP46597 345 aa11.45□□□□□ -0.58
PTCH1-218ENST00000548945 CCT5P48643 541 aa11.45□□□□□ -0.58
PTCH1-218ENST00000548945 PRIM2P49643 509 aa11.45□□□□□ -0.58
PTCH1-218ENST00000548945 SUMO3P55854 103 aaPredicted RBP11.45□□□□□ -0.58
PTCH1-218ENST00000548945 KRTAP1-1Q07627 177 aa11.45□□□□□ -0.58
PTCH1-218ENST00000548945 P2RY6Q15077 328 aa11.45□□□□□ -0.58
PTCH1-218ENST00000548945 ZNF385BQ569K4 471 aa11.45□□□□□ -0.58
PTCH1-218ENST00000548945 HEPHL1Q6MZM0 1159 aa11.45□□□□□ -0.58
PTCH1-218ENST00000548945 ANKRD26P1Q6NSI1 321 aa11.45□□□□□ -0.58
PTCH1-218ENST00000548945 FIGNL1Q6PIW4 674 aa11.45□□□□□ -0.58
PTCH1-218ENST00000548945 TFAP2EQ6VUC0 442 aa11.45□□□□□ -0.58
PTCH1-218ENST00000548945 Q6ZSR9 355 aa11.45□□□□□ -0.58
PTCH1-218ENST00000548945 CXXC5Q7LFL8 322 aaKnown RBP11.45□□□□□ -0.58
PTCH1-218ENST00000548945 SZRD1Q7Z422 152 aa11.45□□□□□ -0.58
PTCH1-218ENST00000548945 R3HCC1LQ7Z5L2 792 aaKnown RBP11.45□□□□□ -0.58
PTCH1-218ENST00000548945 ZAR1Q86SH2 424 aa11.45□□□□□ -0.58
PTCH1-218ENST00000548945 GATSQ8NAP1 163 aa11.45□□□□□ -0.58
PTCH1-218ENST00000548945 HSD17B8Q92506 261 aa11.45□□□□□ -0.58
PTCH1-218ENST00000548945 FBXW5Q969U6 566 aa11.45□□□□□ -0.58
PTCH1-218ENST00000548945 S100PBPQ96BU1 408 aa11.45□□□□□ -0.58
PTCH1-218ENST00000548945 TRMT61AQ96FX7 289 aaKnown RBP11.45□□□□□ -0.58
PTCH1-218ENST00000548945 SH3YL1Q96HL8 342 aaPredicted RBP11.45□□□□□ -0.58
PTCH1-218ENST00000548945 TRMOQ9BU70 441 aa11.45□□□□□ -0.58
PTCH1-218ENST00000548945 HOXD1Q9GZZ0 328 aa11.45□□□□□ -0.58
PTCH1-218ENST00000548945 ESRP2Q9H6T0 727 aaKnown RBP11.45□□□□□ -0.58
PTCH1-218ENST00000548945 C12orf49Q9H741 205 aa11.45□□□□□ -0.58
PTCH1-218ENST00000548945 TMEM185BQ9H7F4 350 aa11.45□□□□□ -0.58
PTCH1-218ENST00000548945 SH3BP4Q9P0V3 963 aa11.45□□□□□ -0.58
PTCH1-218ENST00000548945 KLHL13Q9P2N7 655 aa11.45□□□□□ -0.58
PTCH1-218ENST00000548945 TBK1Q9UHD2 729 aa11.45□□□□□ -0.58
PTCH1-218ENST00000548945 ADAM21Q9UKJ8 722 aa11.45□□□□□ -0.58
PTCH1-218ENST00000548945 LAMP3Q9UQV4 416 aa11.45□□□□□ -0.58
PTCH1-218ENST00000548945 A0A1W2PPM1 405 aa11.44□□□□□ -0.58
PTCH1-218ENST00000548945 AZIN1O14977 448 aa11.44□□□□□ -0.58
PTCH1-218ENST00000548945 OPN1LWP04000 364 aa11.44□□□□□ -0.58
PTCH1-218ENST00000548945 CD3EP07766 207 aa11.44□□□□□ -0.58
PTCH1-218ENST00000548945 DANCRP0C864 163 aa11.44□□□□□ -0.58
PTCH1-218ENST00000548945 CPA3P15088 417 aa11.44□□□□□ -0.58
PTCH1-218ENST00000548945 IL32P24001 234 aa11.44□□□□□ -0.58
PTCH1-218ENST00000548945 CRHR1P34998 444 aa11.44□□□□□ -0.58
PTCH1-218ENST00000548945 IDUAP35475 653 aa11.44□□□□□ -0.58
PTCH1-218ENST00000548945 POU6F2P78424 691 aaPredicted RBP11.44□□□□□ -0.58
PTCH1-218ENST00000548945 CD226Q15762 336 aa11.44□□□□□ -0.58
PTCH1-218ENST00000548945 CLEC12BQ2HXU8 276 aa11.44□□□□□ -0.58
PTCH1-218ENST00000548945 NCMAPQ5T1S8 102 aa11.44□□□□□ -0.58
PTCH1-218ENST00000548945 SFRP5Q5T4F7 317 aa11.44□□□□□ -0.58
PTCH1-218ENST00000548945 LIPMQ5VYY2 423 aa11.44□□□□□ -0.58
PTCH1-218ENST00000548945 CLEC6AQ6EIG7 209 aa11.44□□□□□ -0.58
PTCH1-218ENST00000548945 LRIG3Q6UXM1 1119 aa11.44□□□□□ -0.58
PTCH1-218ENST00000548945 SSX8Q7RTT4 187 aa11.44□□□□□ -0.58
PTCH1-218ENST00000548945 TDRPQ86YL5 185 aa11.44□□□□□ -0.58
PTCH1-218ENST00000548945 SLC43A2Q8N370 569 aa11.44□□□□□ -0.58
PTCH1-218ENST00000548945 ZNF527Q8NB42 609 aa11.44□□□□□ -0.58
PTCH1-218ENST00000548945 LILRB1Q8NHL6 650 aaPredicted RBP11.44□□□□□ -0.58
PTCH1-218ENST00000548945 FBXO30Q8TB52 745 aa11.44□□□□□ -0.58
PTCH1-218ENST00000548945 RAB3IL1Q8TBN0 382 aa11.44□□□□□ -0.58
PTCH1-218ENST00000548945 ABHD3Q8WU67 409 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms