RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 ACTA1P68133 377 aa12.77□□□□□ -0.37
VPS33A-208ENST00000543633 POU4F2Q12837 409 aa12.77□□□□□ -0.37
VPS33A-208ENST00000543633 LRRC32Q14392 662 aa12.77□□□□□ -0.37
VPS33A-208ENST00000543633 TCEAL5Q5H9L2 206 aa12.77□□□□□ -0.37
VPS33A-208ENST00000543633 C18orf63Q68DL7 685 aa12.77□□□□□ -0.37
VPS33A-208ENST00000543633 PLBD1Q6P4A8 553 aa12.77□□□□□ -0.37
VPS33A-208ENST00000543633 FGD2Q7Z6J4 655 aa12.77□□□□□ -0.37
VPS33A-208ENST00000543633 CMIPQ8IY22 773 aa12.77□□□□□ -0.37
VPS33A-208ENST00000543633 SLC44A3Q8N4M1 653 aa12.77□□□□□ -0.37
VPS33A-208ENST00000543633 TMEM99Q8N816 258 aa12.77□□□□□ -0.37
VPS33A-208ENST00000543633 OR9A2Q8NGT5 310 aa12.77□□□□□ -0.37
VPS33A-208ENST00000543633 ZNF431Q8TF32 576 aaPredicted RBP12.77□□□□□ -0.37
VPS33A-208ENST00000543633 SLC35A4Q96G79 324 aa12.77□□□□□ -0.37
VPS33A-208ENST00000543633 CMTM3Q96MX0 182 aa12.77□□□□□ -0.37
VPS33A-208ENST00000543633 CITED4Q96RK1 184 aa12.77□□□□□ -0.37
VPS33A-208ENST00000543633 INSM2Q96T92 566 aaPredicted RBP12.77□□□□□ -0.37
VPS33A-208ENST00000543633 CD180Q99467 661 aa12.77□□□□□ -0.37
VPS33A-208ENST00000543633 ZFP64Q9NPA5 681 aa12.77□□□□□ -0.37
VPS33A-208ENST00000543633 HAO2Q9NYQ3 351 aa12.77□□□□□ -0.37
VPS33A-208ENST00000543633 ABRACLQ9P1F3 81 aa12.77□□□□□ -0.37
VPS33A-208ENST00000543633 SLC23A1Q9UHI7 598 aa12.77□□□□□ -0.37
VPS33A-208ENST00000543633 SIRT4Q9Y6E7 314 aaPredicted RBP12.77□□□□□ -0.37
VPS33A-208ENST00000543633 MDC1Q14676 2089 aaKnown RBP12.77□□□□□ -0.37
VPS33A-208ENST00000543633 ANTXRLA6NF34 631 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 CTDSPLO15194 276 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 GSTZ1O43708 216 aaPredicted RBP12.76□□□□□ -0.37
VPS33A-208ENST00000543633 LANCL1O43813 399 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 HYAL3O43820 417 aaPredicted RBP12.76□□□□□ -0.37
VPS33A-208ENST00000543633 SLC22A5O76082 557 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 SERPINA3P01011 423 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 SAGP10523 405 aaPredicted RBP12.76□□□□□ -0.37
VPS33A-208ENST00000543633 CERS1P27544 350 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 SHC1P29353 583 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 ZNF136P52737 540 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 EPHA4P54764 986 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 EEF1A1P68104 462 aaKnown RBP12.76□□□□□ -0.37
VPS33A-208ENST00000543633 ZNF750Q32MQ0 723 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 BCL2L15Q5TBC7 163 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 GARNL3Q5VVW2 1013 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 ZNF836Q6ZNA1 936 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 GPR135Q8IZ08 494 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 TRMT10AQ8TBZ6 339 aaKnown RBP12.76□□□□□ -0.37
VPS33A-208ENST00000543633 HAVCR2Q8TDQ0 301 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 GAL3ST3Q96A11 431 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 PHF21AQ96BD5 680 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 ZG16BQ96DA0 208 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 PRSS27Q9BQR3 290 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 ACTR6Q9GZN1 396 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 OR51J1Q9H342 316 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 EQTNQ9NQ60 294 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 TM7SF3Q9NS93 570 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 SIDT1Q9NXL6 827 aaKnown RBP12.76□□□□□ -0.37
VPS33A-208ENST00000543633 WDR45Q9Y484 360 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 A0A1B0GTQ1 180 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 EEF1E1O43324 174 aaKnown RBP12.76□□□□□ -0.37
VPS33A-208ENST00000543633 RNGTTO60942 597 aaKnown RBP12.76□□□□□ -0.37
VPS33A-208ENST00000543633 FZD7O75084 574 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 TMEM127O75204 238 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 ITGA10O75578 1167 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 TCRBP04435 133 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 TFPIP10646 304 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 UGT2B7P16662 529 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 CEBPBP17676 345 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 BMP7P18075 431 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 CMPK1P30085 196 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 NRG3P56975 720 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 DYRK1AQ13627 763 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 GAS6Q14393 721 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 ZNF234Q14588 700 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 CCDC85BQ15834 202 aaPredicted RBP12.76□□□□□ -0.37
VPS33A-208ENST00000543633 UAP1L1Q3KQV9 507 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 SLC36A2Q495M3 483 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 TEX261Q6UWH6 196 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 ASPGQ86U10 573 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 AMIGO1Q86WK6 493 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 LRRC25Q8N386 305 aaPredicted RBP12.76□□□□□ -0.37
VPS33A-208ENST00000543633 MRPL43Q8N983 215 aaKnown RBP12.76□□□□□ -0.37
VPS33A-208ENST00000543633 OR2L3Q8NG85 312 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 PHOSPHO2Q8TCD6 241 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 PMM1Q92871 262 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 LRFN5Q96NI6 719 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 TRMT61BQ9BVS5 477 aaKnown RBP12.76□□□□□ -0.37
VPS33A-208ENST00000543633 ZCCHC4Q9H5U6 513 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 ERVMER34-1Q9H9K5 563 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 NUDT15Q9NV35 164 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 ZNF624Q9P2J8 865 aaPredicted RBP12.76□□□□□ -0.37
VPS33A-208ENST00000543633 DEC1Q9P2X7 70 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 EIF3KQ9UBQ5 218 aaKnown RBP12.76□□□□□ -0.37
VPS33A-208ENST00000543633 FBXL21Q9UKT6 434 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 HCFC2Q9Y5Z7 792 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 U3KQ87 197 aa12.76□□□□□ -0.37
VPS33A-208ENST00000543633 LAMA3Q16787 3333 aa12.75□□□□□ -0.37
VPS33A-208ENST00000543633 PRR19A6NJB7 356 aa12.75□□□□□ -0.37
VPS33A-208ENST00000543633 SLC9B1P1A6NJY1 282 aa12.75□□□□□ -0.37
VPS33A-208ENST00000543633 PRR23D1E9PI22 279 aaPredicted RBP12.75□□□□□ -0.37
VPS33A-208ENST00000543633 SMLR1H3BR10 107 aa12.75□□□□□ -0.37
VPS33A-208ENST00000543633 STX11O75558 287 aa12.75□□□□□ -0.37
VPS33A-208ENST00000543633 NTN1O95631 604 aa12.75□□□□□ -0.37
VPS33A-208ENST00000543633 RAF1P04049 648 aa12.75□□□□□ -0.37
VPS33A-208ENST00000543633 CD1AP06126 327 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms