RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 CARD18P57730 90 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 SARNPP82979 210 aaKnown RBP4.18□□□□□ -1.74
LIMS1-214ENST00000542845 IRF8Q02556 426 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 EFR3AQ14156 821 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 SPA17Q15506 151 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 OASLQ15646 514 aaKnown RBP4.18□□□□□ -1.74
LIMS1-214ENST00000542845 TMEM35AQ53FP2 167 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 TRMT12Q53H54 448 aaKnown RBP4.18□□□□□ -1.74
LIMS1-214ENST00000542845 PAGE2BQ5JRK9 111 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 PDSS1Q5T2R2 415 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 PRAMEF9Q5VWM5 478 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 ZNF544Q6NX49 715 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 FAM180BQ6P0A1 224 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 TFAP2EQ6VUC0 442 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 RBMS3Q6XE24 437 aaKnown RBP4.18□□□□□ -1.74
LIMS1-214ENST00000542845 USP43Q70EL4 1123 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 PEX26Q7Z412 305 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 SPATA19Q7Z5L4 167 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 MARCH3Q86UD3 253 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 GGNQ86UU5 652 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 EXOC3L1Q86VI1 746 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 MYLK4Q86YV6 388 aaPredicted RBP4.18□□□□□ -1.74
LIMS1-214ENST00000542845 UBE2J2Q8N2K1 259 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 CDYL2Q8N8U2 506 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 C17orf47Q8NEP4 570 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 C1orf162Q8NEQ5 155 aaPredicted RBP4.18□□□□□ -1.74
LIMS1-214ENST00000542845 ATP6V1C2Q8NEY4 427 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 TRIM58Q8NG06 486 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 OR7G1Q8NGA0 311 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 OR52R1Q8NGF1 315 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 UHMK1Q8TAS1 419 aaKnown RBP4.18□□□□□ -1.74
LIMS1-214ENST00000542845 ZNF473Q8WTR7 871 aaKnown RBP4.18□□□□□ -1.74
LIMS1-214ENST00000542845 ABHD3Q8WU67 409 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 SLC9A6Q92581 669 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 TMEM186Q96B77 213 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 MTBPQ96DY7 904 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 LRRC37BQ96QE4 947 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 MTERF1Q99551 399 aaKnown RBP4.18□□□□□ -1.74
LIMS1-214ENST00000542845 BPIFA3Q9BQP9 254 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 CENPKQ9BS16 269 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 EFCAB11Q9BUY7 163 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 PITHD1Q9GZP4 211 aaPredicted RBP4.18□□□□□ -1.74
LIMS1-214ENST00000542845 MS4A5Q9H3V2 200 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 ANKZF1Q9H8Y5 726 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 ANKRA2Q9H9E1 313 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 FKRPQ9H9S5 495 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 PPANQ9NQ55 473 aaKnown RBP4.18□□□□□ -1.74
LIMS1-214ENST00000542845 SDHAF3Q9NRP4 125 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 LYARQ9NX58 379 aaKnown RBP4.18□□□□□ -1.74
LIMS1-214ENST00000542845 CTNNAL1Q9UBT7 734 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 ASIC3Q9UHC3 531 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 CFL2Q9Y281 166 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 PLLPQ9Y342 182 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 ASB4Q9Y574 426 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 AP4B1Q9Y6B7 739 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 VWFP04275 2813 aa4.18□□□□□ -1.74
LIMS1-214ENST00000542845 IGHV3-15A0A0B4J1V0 119 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 A0A0J9YW62 118 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 ZCWPW2A0A1B0GU75 182 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 MAGEB16A2A368 324 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 OR6C70A6NIJ9 312 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 SDR42E2A6NKP2 422 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 GOLGA6L19H0YKK7 550 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 TAPBPO15533 448 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 TMPRSS11DO60235 418 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 TSPAN2O60636 221 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 KERAO60938 352 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 IGHV3-9P01782 118 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 TACSTD2P09758 323 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 PABPC4LP0CB38 370 aaKnown RBP4.17□□□□□ -1.74
LIMS1-214ENST00000542845 CPMP14384 443 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 DDX5P17844 614 aaKnown RBP4.17□□□□□ -1.74
LIMS1-214ENST00000542845 DRD5P21918 477 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 ME2P23368 584 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 GABRB3P28472 473 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 SFTPDP35247 375 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 KCNJ1P48048 391 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 CLK3P49761 638 aaKnown RBP4.17□□□□□ -1.74
LIMS1-214ENST00000542845 MECP2P51608 486 aaKnown RBP4.17□□□□□ -1.74
LIMS1-214ENST00000542845 GAS1P54826 345 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 CORO7P57737 925 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 SNRPD2P62316 118 aaKnown RBP4.17□□□□□ -1.74
LIMS1-214ENST00000542845 MRPS35P82673 323 aaKnown RBP4.17□□□□□ -1.74
LIMS1-214ENST00000542845 TSNQ15631 228 aaKnown RBP4.17□□□□□ -1.74
LIMS1-214ENST00000542845 LTB4RQ15722 352 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 PDK4Q16654 411 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 ZSWIM7Q19AV6 140 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 PRICKLE4Q2TBC4 344 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 MST1LQ2TV78 715 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 TIMM23BQ5SRD1 257 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 SEL1L2Q5TEA6 688 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 OR52E8Q6IFG1 317 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 MED27Q6P2C8 311 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 UGT2A3Q6UWM9 527 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 Q6ZT83 130 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 SLC44A2Q8IWA5 706 aaPredicted RBP4.17□□□□□ -1.74
LIMS1-214ENST00000542845 LMNTD2Q8IXW0 634 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 ZNF100Q8IYN0 542 aa4.17□□□□□ -1.74
LIMS1-214ENST00000542845 ZCCHC24Q8N2G6 241 aaKnown RBP4.17□□□□□ -1.74
LIMS1-214ENST00000542845 GBP7Q8N8V2 638 aaPredicted RBP4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms