RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 CSF2P04141 144 aa9.15□□□□□ -0.95
SS18-205ENST00000542420 LIMS3P0CW19 117 aa9.15□□□□□ -0.95
SS18-205ENST00000542420 LIMS4P0CW20 117 aa9.15□□□□□ -0.95
SS18-205ENST00000542420 NME1P15531 152 aaKnown RBP9.15□□□□□ -0.95
SS18-205ENST00000542420 GNSP15586 552 aa9.15□□□□□ -0.95
SS18-205ENST00000542420 PRKCAP17252 672 aa9.15□□□□□ -0.95
SS18-205ENST00000542420 TGFBR1P36897 503 aa9.15□□□□□ -0.95
SS18-205ENST00000542420 SLC1A3P43003 542 aa9.15□□□□□ -0.95
SS18-205ENST00000542420 VSX2P58304 361 aaPredicted RBP9.15□□□□□ -0.95
SS18-205ENST00000542420 METAP1DQ6UB28 335 aaPredicted RBP9.15□□□□□ -0.95
SS18-205ENST00000542420 OLIG3Q7RTU3 272 aa9.15□□□□□ -0.95
SS18-205ENST00000542420 MCATQ8IVS2 390 aaKnown RBP9.15□□□□□ -0.95
SS18-205ENST00000542420 GALNT12Q8IXK2 581 aa9.15□□□□□ -0.95
SS18-205ENST00000542420 TDHQ8IZJ6 230 aa9.15□□□□□ -0.95
SS18-205ENST00000542420 ZNF486Q96H40 463 aaPredicted RBP9.15□□□□□ -0.95
SS18-205ENST00000542420 B3GNT4Q9C0J1 378 aa9.15□□□□□ -0.95
SS18-205ENST00000542420 ZNF576Q9H609 170 aa9.15□□□□□ -0.95
SS18-205ENST00000542420 TXNL4BQ9NX01 149 aaKnown RBP9.15□□□□□ -0.95
SS18-205ENST00000542420 SIDT1Q9NXL6 827 aaKnown RBP9.15□□□□□ -0.95
SS18-205ENST00000542420 NPAP1Q9NZP6 1156 aa9.15□□□□□ -0.95
SS18-205ENST00000542420 MYO9BQ13459 2157 aa9.15□□□□□ -0.95
SS18-205ENST00000542420 CEP192Q8TEP8 1941 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 CHD9Q3L8U1 2897 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 TRBV23OR9-2A0A075B6M9 112 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 A0A0B4J2E0 115 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 A0A1B0GX12 115 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 SLC22A31A6NKX4 558 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 EFCAB7A8K855 629 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 BHLHE40O14503 412 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 CDK2AP1O14519 115 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 KCNK2O95069 426 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 HLA-DPB1P04440 258 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 NAT2P11245 290 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 CKMT1AP12532 417 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 S1PR1P21453 382 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 CD27P26842 260 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 HTR2AP28223 471 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 CAPZBP47756 277 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 RNF144AP50876 292 aaPredicted RBP9.14□□□□□ -0.95
SS18-205ENST00000542420 HSD17B7P56937 341 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 TAS2R43P59537 309 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 PSPHP78330 225 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 POU4F2Q12837 409 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 ZNF155Q12901 538 aaPredicted RBP9.14□□□□□ -0.95
SS18-205ENST00000542420 SERTAD2Q14140 314 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 GPR68Q15743 365 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 ISXQ2M1V0 245 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 TMPRSS11AQ6ZMR5 421 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 ZNF438Q7Z4V0 828 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 WDR53Q7Z5U6 358 aaPredicted RBP9.14□□□□□ -0.95
SS18-205ENST00000542420 BMP8AQ7Z5Y6 402 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 ZNF687Q8N1G0 1237 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 FANK1Q8TC84 345 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 GPR151Q8TDV0 419 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 TMEM255BQ8WV15 326 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 LRRC61Q9BV99 259 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 OR52D1Q9H346 318 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 UBQLN3Q9H347 655 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 FOLH1BQ9HBA9 442 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 CMC2Q9NRP2 79 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 CNIH4Q9P003 139 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 FBXO9Q9UK97 447 aaPredicted RBP9.14□□□□□ -0.95
SS18-205ENST00000542420 CBLCQ9ULV8 474 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 PLCL2Q9UPR0 1127 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 GOLGA4Q13439 2230 aaKnown RBP9.14□□□□□ -0.95
SS18-205ENST00000542420 THADAQ6YHU6 1953 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 NPIPB9F8W1W9 429 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 SEC14L5O43304 696 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 FRS3O43559 492 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 OR10H2O60403 315 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 ICMTO60725 284 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 APOA1P02647 267 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 ST6GAL1P15907 406 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 GABRA3P34903 492 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 PTGER1P34995 402 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 ADH7P40394 386 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 SOX3P41225 446 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 NR4A2P43354 598 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 GCGRP47871 477 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 GABRA4P48169 554 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 NKX2-5P52952 324 aaPredicted RBP9.14□□□□□ -0.95
SS18-205ENST00000542420 FOXK2Q01167 660 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 FGFBP1Q14512 234 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 MAPK14Q16539 360 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.14□□□□□ -0.95
SS18-205ENST00000542420 LRIT3Q3SXY7 679 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 PERM1Q5SV97 790 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 LINC00114Q6XXX2 140 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 PRR23CQ6ZRP0 262 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 MEPCEQ7L2J0 689 aaKnown RBP9.14□□□□□ -0.95
SS18-205ENST00000542420 CXXC5Q7LFL8 322 aaKnown RBP9.14□□□□□ -0.95
SS18-205ENST00000542420 NUP54Q7Z3B4 507 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 SLC22A16Q86VW1 577 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 OR4N5Q8IXE1 308 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 TMEM52Q8NDY8 209 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 VSTM2LQ96N03 204 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 ZNF649Q9BS31 505 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 CNPPD1Q9BV87 410 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 PHF7Q9BWX1 381 aaPredicted RBP9.14□□□□□ -0.95
SS18-205ENST00000542420 SLC19A3Q9BZV2 496 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms