RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	FAM131A	Q6UXB0	335 aa		13.74	□□□□□ -0.21
DDX55-209	ENST00000542286	DTX3	Q8N9I9	347 aa		13.74	□□□□□ -0.21
DDX55-209	ENST00000542286	OR4K14	Q8NGD5	310 aa		13.74	□□□□□ -0.21
DDX55-209	ENST00000542286	TMED9	Q9BVK6	235 aa		13.74	□□□□□ -0.21
DDX55-209	ENST00000542286	HDHD5	Q9BXW7	423 aa		13.74	□□□□□ -0.21
DDX55-209	ENST00000542286	TBC1D17	Q9HA65	648 aa		13.74	□□□□□ -0.21
DDX55-209	ENST00000542286	DAPP1	Q9UN19	280 aa		13.74	□□□□□ -0.21
DDX55-209	ENST00000542286	LIMS3	P0CW19	117 aa		13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	LIMS4	P0CW20	117 aa		13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	HTR2A	P28223	471 aa		13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	TNFRSF4	P43489	277 aa		13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	KIR2DL3	P43628	341 aa		13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	MTNR1A	P48039	350 aa		13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	TRAM2	Q15035	370 aa		13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	TOR2A	Q5JU69	321 aa		13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	FAM160A2	Q8N612	972 aa	Predicted RBP	13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	TMEM163	Q8TC26	289 aa		13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	HCAR1	Q9BXC0	346 aa		13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	NDUFB11	Q9NX14	153 aa		13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	ZSCAN32	Q9NX65	697 aa		13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	KLHL21	Q9UJP4	597 aa		13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	RABL2B	Q9UNT1	228 aa		13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	HSPB11	Q9Y547	144 aa		13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	ASXL3	Q9C0F0	2248 aa		13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	HRK	O00198	91 aa		13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	HR	O43593	1189 aa		13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	TSPAN19	P0C672	248 aa		13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	HLA-DMA	P28067	261 aa		13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	RORC	P51449	518 aa		13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	VSX2	P58304	361 aa	Predicted RBP	13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	PSPH	P78330	225 aa		13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	POU6F2	P78424	691 aa	Predicted RBP	13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	ERV3-1	Q14264	604 aa		13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	CRTC2	Q53ET0	693 aa	Predicted RBP	13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	CREB3L2	Q70SY1	520 aa		13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	PROKR2	Q8NFJ6	384 aa		13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	GRHL3	Q8TE85	626 aa		13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	SCARF2	Q96GP6	870 aa	Predicted RBP	13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	S1PR5	Q9H228	398 aa		13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	FAM60A	Q9NP50	221 aa		13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	ABCB9	Q9NP78	766 aa		13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	C12orf4	Q9NQ89	552 aa		13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	STUB1	Q9UNE7	303 aa		13.73	□□□□□ -0.21
DDX55-209	ENST00000542286	CASC3	O15234	703 aa	Known RBP	13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	CSF3	P09919	207 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	TEAD1	P28347	426 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	CDH11	P55287	796 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	RPS15A	P62244	130 aa	Known RBP	13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	QPRT	Q15274	297 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	MEDAG	Q5VYS4	303 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286		Q6ZS52	159 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	METTL27	Q8N6F8	245 aa	Predicted RBP	13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	SRFBP1	Q8NEF9	429 aa	Known RBP	13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	OR4N2	Q8NGD1	307 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	RLN3	Q8WXF3	142 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	RSC1A1	Q92681	617 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	SDF2	Q99470	211 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	NIPAL2	Q9H841	368 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	HRASLS2	Q9NWW9	162 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	DIMT1	Q9UNQ2	313 aa	Known RBP	13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	LIPT1	Q9Y234	373 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	C2orf92	A0A1B0GVN3	265 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	SHISA3	A0PJX4	238 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286		A6NCN8	305 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	SMLR1	H3BR10	107 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	C1QB	P02746	253 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	CPM	P14384	443 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	MYL12A	P19105	171 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	PTGS2	P35354	604 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	ZNF136	P52737	540 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	FABP5	Q01469	135 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	RUNX1T1	Q06455	604 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	ST3GAL3	Q11203	375 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	COX10	Q12887	443 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	TSPAN31	Q12999	210 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	GHDC	Q8N2G8	530 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	PIGX	Q8TBF5	258 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	ENKUR	Q8TC29	256 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	MS4A4E	Q96PG1	132 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	ISG20L2	Q9H9L3	353 aa	Known RBP	13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	CLCA2	Q9UQC9	943 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	CMAHP	Q9Y471	501 aa		13.72	□□□□□ -0.21
DDX55-209	ENST00000542286	HYKK	A2RU49	373 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	B3GALT2	O43825	422 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	ADAM11	O75078	769 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	RDH16	O75452	317 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	ZGLP1	P0C6A0	271 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	POU3F3	P20264	500 aa	Predicted RBP	13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	MAK	P20794	623 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	FXYD6P3	P58550	94 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	PLAUR	Q03405	335 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	C1D	Q13901	141 aa	Known RBP	13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	TATDN3	Q17R31	274 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	PDZK1	Q5T2W1	519 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	MRPL2	Q5T653	305 aa	Known RBP	13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	TIGD3	Q6B0B8	471 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	LAMTOR1	Q6IAA8	161 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	XKRX	Q6PP77	449 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	CPO	Q8IVL8	374 aa		13.71	□□□□□ -0.21
DDX55-209	ENST00000542286	SIRT6	Q8N6T7	355 aa		13.71	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms