RNA–Protein interactions for RNA: ENST00000532538.1

BRPF3-210, Transcript of bromodomain and PHD finger containing 3, human

TSL 4

Gene BRPF3, Length 567 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRPF3-210	ENST00000532538	ZCCHC3	Q9NUD5	404 aa	Known RBP	13.56	□□□□□ -0.24
BRPF3-210	ENST00000532538	GIN1	Q9NXP7	522 aa		13.56	□□□□□ -0.24
BRPF3-210	ENST00000532538	CR1	P17927	2039 aa		13.56	□□□□□ -0.24
BRPF3-210	ENST00000532538		A0A1W2PP18	115 aa		13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	COPE	O14579	308 aa		13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	ADAMDEC1	O15204	470 aa		13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	TMCC2	O75069	709 aa		13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	NTN1	O95631	604 aa		13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	HSPA4L	O95757	839 aa		13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	PROC	P04070	461 aa		13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	FES	P07332	822 aa		13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	NGFR	P08138	427 aa		13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	NEFH	P12036	1026 aa		13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	SDC1	P18827	310 aa		13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	PSMB1	P20618	241 aa	Known RBP	13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	SLC7A1	P30825	629 aa		13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	IDUA	P35475	653 aa		13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	HPCAL1	P37235	193 aa		13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	CCR4	P51679	360 aa		13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	DNAJB13	P59910	316 aa		13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	DMTN	Q08495	405 aa		13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	FAP	Q12884	760 aa		13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	FOXF1	Q12946	379 aa		13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	LASP1	Q14847	261 aa	Known RBP	13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	RNPS1	Q15287	305 aa	Known RBP	13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	TMEM176B	Q3YBM2	270 aa	Predicted RBP	13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	SPDYE7P	Q495Y7	208 aa		13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	LIPM	Q5VYY2	423 aa		13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	ZCCHC12	Q6PEW1	402 aa		13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	R3HCC1L	Q7Z5L2	792 aa	Known RBP	13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	TUSC5	Q8IXB3	177 aa		13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	BANP	Q8N9N5	519 aa		13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	OR2W6P	Q8NHA6	318 aa		13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	FBXO27	Q8NI29	283 aa		13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	UBLCP1	Q8WVY7	318 aa	Predicted RBP	13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	CDS1	Q92903	461 aa		13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	KISS1R	Q969F8	398 aa	Predicted RBP	13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	BTBD2	Q9BX70	525 aa		13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	OR10A4	Q9H209	315 aa		13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	TNFRSF12A	Q9NP84	129 aa		13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	ZNF701	Q9NV72	531 aa	Predicted RBP	13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	MID2	Q9UJV3	735 aa		13.55	□□□□□ -0.24
BRPF3-210	ENST00000532538	HEATR1	Q9H583	2144 aa	Known RBP	13.54	□□□□□ -0.24
BRPF3-210	ENST00000532538	GIMAP1-GIMAP5	A0A087WTJ2	511 aa		13.54	□□□□□ -0.24
BRPF3-210	ENST00000532538	NPIPA5	A0A0B4J1W7	369 aa		13.54	□□□□□ -0.24
BRPF3-210	ENST00000532538	C7orf72	A4D263	438 aa		13.54	□□□□□ -0.24
BRPF3-210	ENST00000532538	NPIPA7	E9PJI5	369 aa		13.54	□□□□□ -0.24
BRPF3-210	ENST00000532538	PLIN3	O60664	434 aa		13.54	□□□□□ -0.24
BRPF3-210	ENST00000532538	PRKD3	O94806	890 aa		13.54	□□□□□ -0.24
BRPF3-210	ENST00000532538	ADA	P00813	363 aa		13.54	□□□□□ -0.24
BRPF3-210	ENST00000532538	FAM153B	P0C7A2	387 aa		13.54	□□□□□ -0.24
BRPF3-210	ENST00000532538	NPIPA8	P0DM63	369 aa		13.54	□□□□□ -0.24
BRPF3-210	ENST00000532538	LCN1	P31025	176 aa		13.54	□□□□□ -0.24
BRPF3-210	ENST00000532538	CDKN1A	P38936	164 aa		13.54	□□□□□ -0.24
BRPF3-210	ENST00000532538	ASMT	P46597	345 aa		13.54	□□□□□ -0.24
BRPF3-210	ENST00000532538	TP53BP2	Q13625	1128 aa		13.54	□□□□□ -0.24
BRPF3-210	ENST00000532538	KIAA0040	Q15053	153 aa		13.54	□□□□□ -0.24
BRPF3-210	ENST00000532538	STK11	Q15831	433 aa		13.54	□□□□□ -0.24
BRPF3-210	ENST00000532538	ZNF239	Q16600	458 aa	Known RBP	13.54	□□□□□ -0.24
BRPF3-210	ENST00000532538	FAM153C	Q494X1	144 aa		13.54	□□□□□ -0.24
BRPF3-210	ENST00000532538	FCRLA	Q7L513	359 aa		13.54	□□□□□ -0.24
BRPF3-210	ENST00000532538	NUFIP2	Q7Z417	695 aa	Known RBP	13.54	□□□□□ -0.24
BRPF3-210	ENST00000532538	POC1B	Q8TC44	478 aa		13.54	□□□□□ -0.24
BRPF3-210	ENST00000532538	ADAMTS15	Q8TE58	950 aa		13.54	□□□□□ -0.24
BRPF3-210	ENST00000532538	ARL8A	Q96BM9	186 aa		13.54	□□□□□ -0.24
BRPF3-210	ENST00000532538	GIMAP5	Q96F15	307 aa		13.54	□□□□□ -0.24
BRPF3-210	ENST00000532538	C12orf65	Q9H3J6	166 aa	Known RBP	13.54	□□□□□ -0.24
BRPF3-210	ENST00000532538	ACSS1	Q9NUB1	689 aa	Predicted RBP	13.54	□□□□□ -0.24
BRPF3-210	ENST00000532538	OXSM	Q9NWU1	459 aa		13.54	□□□□□ -0.24
BRPF3-210	ENST00000532538	FAF1	Q9UNN5	650 aa	Predicted RBP	13.54	□□□□□ -0.24
BRPF3-210	ENST00000532538	CARD8	Q9Y2G2	431 aa		13.54	□□□□□ -0.24
BRPF3-210	ENST00000532538	CSPG4	Q6UVK1	2322 aa		13.53	□□□□□ -0.24
BRPF3-210	ENST00000532538	NSD1	Q96L73	2696 aa	Predicted RBP	13.53	□□□□□ -0.24
BRPF3-210	ENST00000532538		A0A1W2PQD3	144 aa		13.53	□□□□□ -0.24
BRPF3-210	ENST00000532538	TMEM114	B3SHH9	223 aa		13.53	□□□□□ -0.24
BRPF3-210	ENST00000532538	ZNF195	O14628	629 aa		13.53	□□□□□ -0.24
BRPF3-210	ENST00000532538	CFLAR	O15519	480 aa		13.53	□□□□□ -0.24
BRPF3-210	ENST00000532538	CYP7B1	O75881	506 aa		13.53	□□□□□ -0.24
BRPF3-210	ENST00000532538	HMGN2	P05204	90 aa	Known RBP	13.53	□□□□□ -0.24
BRPF3-210	ENST00000532538	PAX1	P15863	534 aa		13.53	□□□□□ -0.24
BRPF3-210	ENST00000532538	PRPH2	P23942	346 aa		13.53	□□□□□ -0.24
BRPF3-210	ENST00000532538	MAPK1	P28482	360 aa		13.53	□□□□□ -0.24
BRPF3-210	ENST00000532538	SHC1	P29353	583 aa		13.53	□□□□□ -0.24
BRPF3-210	ENST00000532538	P2RX1	P51575	399 aa		13.53	□□□□□ -0.24
BRPF3-210	ENST00000532538	ZNF117	Q03924	483 aa		13.53	□□□□□ -0.24
BRPF3-210	ENST00000532538	ZNF844	Q08AG5	666 aa		13.53	□□□□□ -0.24
BRPF3-210	ENST00000532538	CD226	Q15762	336 aa		13.53	□□□□□ -0.24
BRPF3-210	ENST00000532538	RFTN2	Q52LD8	501 aa	Predicted RBP	13.53	□□□□□ -0.24
BRPF3-210	ENST00000532538	SFRP5	Q5T4F7	317 aa		13.53	□□□□□ -0.24
BRPF3-210	ENST00000532538	CDC73	Q6P1J9	531 aa		13.53	□□□□□ -0.24
BRPF3-210	ENST00000532538	CXXC5	Q7LFL8	322 aa	Known RBP	13.53	□□□□□ -0.24
BRPF3-210	ENST00000532538	MTERF4	Q7Z6M4	381 aa	Known RBP	13.53	□□□□□ -0.24
BRPF3-210	ENST00000532538	FAM110B	Q8TC76	370 aa		13.53	□□□□□ -0.24
BRPF3-210	ENST00000532538	SMAP2	Q8WU79	429 aa	Predicted RBP	13.53	□□□□□ -0.24
BRPF3-210	ENST00000532538	HSD17B8	Q92506	261 aa		13.53	□□□□□ -0.24
BRPF3-210	ENST00000532538	FAM120B	Q96EK7	910 aa	Known RBP	13.53	□□□□□ -0.24
BRPF3-210	ENST00000532538	HS6ST2	Q96MM7	605 aa		13.53	□□□□□ -0.24
BRPF3-210	ENST00000532538	SRXN1	Q9BYN0	137 aa		13.53	□□□□□ -0.24
BRPF3-210	ENST00000532538	HOXD1	Q9GZZ0	328 aa		13.53	□□□□□ -0.24
BRPF3-210	ENST00000532538	KLHL13	Q9P2N7	655 aa		13.53	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms