RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 FPGTO14772 594 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 ZW10O43264 779 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 TLX2O43763 284 aaPredicted RBP3.24□□□□□ -1.89
CD44-235ENST00000532339 NUDT21O43809 227 aaKnown RBP3.24□□□□□ -1.89
CD44-235ENST00000532339 ACSL4O60488 711 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 RAD51DO75771 328 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 PLEKHA8P1O95397 391 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 IGHV4-59P01825 116 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 PLEKP08567 350 aaPredicted RBP3.24□□□□□ -1.89
CD44-235ENST00000532339 HOXD4P09016 255 aaPredicted RBP3.24□□□□□ -1.89
CD44-235ENST00000532339 ALPIP09923 528 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 THRAP10827 490 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 LHCGRP22888 699 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 ANXA13P27216 316 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 DRD3P35462 400 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 PSMD8P48556 350 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 TDGF1P3P51864 188 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 SNRPD1P62314 119 aaKnown RBP3.24□□□□□ -1.89
CD44-235ENST00000532339 SQLEQ14534 574 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 PPA1Q15181 289 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 ELOCQ15369 112 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 XKR6Q5GH73 641 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 AGAP6Q5VW22 663 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 WSCD1Q658N2 575 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 UGT3A1Q6NUS8 523 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 NEK5Q6P3R8 708 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 TRIM65Q6PJ69 517 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 SYVN1Q86TM6 617 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 ASPGQ86U10 573 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 CDC20BQ86Y33 519 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 CROCCP3Q8IVE0 287 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 SPAG16Q8N0X2 631 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 CLEC1AQ8NC01 280 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 OR4D9Q8NGE8 314 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 FAM222BQ8WU58 562 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 PIK3R3Q92569 461 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 BMFQ96LC9 184 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 GAL3ST4Q96RP7 486 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 PKMYT1Q99640 499 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 PRMT1Q99873 361 aaKnown RBP3.24□□□□□ -1.89
CD44-235ENST00000532339 CTRCQ99895 268 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 VGLL1Q99990 258 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 C17orf62Q9BQA9 187 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 LXNQ9BS40 222 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 ALKBH7Q9BT30 221 aaPredicted RBP3.24□□□□□ -1.89
CD44-235ENST00000532339 SYT11Q9BT88 431 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 KRTAP4-4Q9BYR3 166 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 MTMR12Q9C0I1 747 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 CCSER1Q9C0I3 900 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 CUEDC2Q9H467 287 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 C6orf50Q9HD87 102 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 FLRT3Q9NZU0 649 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 TMEM181Q9P2C4 612 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 IL19Q9UHD0 177 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 SH3BGRL2Q9UJC5 107 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 TNNQ9UQP3 1299 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 DYSFO75923 2080 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 LRP4O75096 1905 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 A0A087WW49 117 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 CACNB4O00305 520 aaPredicted RBP3.23□□□□□ -1.89
CD44-235ENST00000532339 PIRO00625 290 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 POLR1CO15160 346 aaPredicted RBP3.23□□□□□ -1.89
CD44-235ENST00000532339 B4GAT1O43505 415 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 HMMRO75330 724 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 SEC22BO75396 215 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 TRMUO75648 421 aaKnown RBP3.23□□□□□ -1.89
CD44-235ENST00000532339 DFFBO76075 338 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 IL1BP01584 269 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 ATP1B1P05026 303 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 ABHD2P08910 425 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 PTMSP20962 102 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 HLA-FP30511 346 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 CEACAM8P31997 349 aaPredicted RBP3.23□□□□□ -1.89
CD44-235ENST00000532339 SFTPDP35247 375 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 CLDN17P56750 224 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 IL1RL1Q01638 556 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 OPCMLQ14982 345 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 EXT1Q16394 746 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 C9orf64Q5T6V5 341 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 C20orf194Q5TEA3 1177 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 LIPNQ5VXI9 398 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 ETFRF1Q6IPR1 90 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 PWWP2BQ6NUJ5 590 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 CASC1Q6TDU7 716 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 PRUNE1Q86TP1 453 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 ACOT1Q86TX2 421 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 PIGZQ86VD9 579 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 HORMAD1Q86X24 394 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 RCOR2Q8IZ40 523 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 LRRC75A-AS1Q8N1F1 130 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 ZNF614Q8N883 585 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 KBTBD8Q8NFY9 601 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 OR13C3Q8NGS6 347 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 EXOC6Q8TAG9 804 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 TSPAN18Q96SJ8 248 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 SPXQ9BT56 116 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 CABLES2Q9BTV7 478 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 ULBP3Q9BZM4 244 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 THAP2Q9H0W7 228 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 TNMDQ9H2S6 317 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms