RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 STACQ99469 402 aa13.2□□□□□ -0.3
VPS28-215ENST00000531924 SMR3AQ99954 134 aa13.2□□□□□ -0.3
VPS28-215ENST00000531924 C12orf49Q9H741 205 aa13.2□□□□□ -0.3
VPS28-215ENST00000531924 DUSP22Q9NRW4 184 aa13.2□□□□□ -0.3
VPS28-215ENST00000531924 FBXO34Q9NWN3 711 aa13.2□□□□□ -0.3
VPS28-215ENST00000531924 GIN1Q9NXP7 522 aa13.2□□□□□ -0.3
VPS28-215ENST00000531924 ATP6V1HQ9UI12 483 aa13.2□□□□□ -0.3
VPS28-215ENST00000531924 A0A1W2PQD3 144 aa13.19□□□□□ -0.3
VPS28-215ENST00000531924 LYPLA1O75608 230 aaPredicted RBP13.19□□□□□ -0.3
VPS28-215ENST00000531924 SOX30O94993 753 aa13.19□□□□□ -0.3
VPS28-215ENST00000531924 SLU7O95391 586 aaKnown RBP13.19□□□□□ -0.3
VPS28-215ENST00000531924 CCT3P49368 545 aaKnown RBP13.19□□□□□ -0.3
VPS28-215ENST00000531924 NR1H2P55055 460 aa13.19□□□□□ -0.3
VPS28-215ENST00000531924 TMEM201Q5SNT2 666 aa13.19□□□□□ -0.3
VPS28-215ENST00000531924 MTERF4Q7Z6M4 381 aaKnown RBP13.19□□□□□ -0.3
VPS28-215ENST00000531924 TRABD2AQ86V40 505 aa13.19□□□□□ -0.3
VPS28-215ENST00000531924 WFDC8Q8IUA0 241 aa13.19□□□□□ -0.3
VPS28-215ENST00000531924 BANPQ8N9N5 519 aa13.19□□□□□ -0.3
VPS28-215ENST00000531924 FNDC5Q8NAU1 212 aa13.19□□□□□ -0.3
VPS28-215ENST00000531924 OR2W6PQ8NHA6 318 aa13.19□□□□□ -0.3
VPS28-215ENST00000531924 ARL8AQ96BM9 186 aa13.19□□□□□ -0.3
VPS28-215ENST00000531924 HS3ST6Q96QI5 342 aa13.19□□□□□ -0.3
VPS28-215ENST00000531924 BDH2Q9BUT1 245 aa13.19□□□□□ -0.3
VPS28-215ENST00000531924 ACTRT3Q9BYD9 372 aa13.19□□□□□ -0.3
VPS28-215ENST00000531924 PIGUQ9H490 435 aa13.19□□□□□ -0.3
VPS28-215ENST00000531924 MKS1Q9NXB0 559 aa13.19□□□□□ -0.3
VPS28-215ENST00000531924 A0A0J9YW62 118 aa13.18□□□□□ -0.3
VPS28-215ENST00000531924 SPAG7O75391 227 aa13.18□□□□□ -0.3
VPS28-215ENST00000531924 LAMP1P11279 417 aa13.18□□□□□ -0.3
VPS28-215ENST00000531924 IL11P20809 199 aa13.18□□□□□ -0.3
VPS28-215ENST00000531924 SERPINB5P36952 375 aa13.18□□□□□ -0.3
VPS28-215ENST00000531924 RNPS1Q15287 305 aaKnown RBP13.18□□□□□ -0.3
VPS28-215ENST00000531924 CD226Q15762 336 aa13.18□□□□□ -0.3
VPS28-215ENST00000531924 CTU2Q2VPK5 515 aaKnown RBP13.18□□□□□ -0.3
VPS28-215ENST00000531924 UGT3A2Q3SY77 523 aa13.18□□□□□ -0.3
VPS28-215ENST00000531924 CDC73Q6P1J9 531 aa13.18□□□□□ -0.3
VPS28-215ENST00000531924 BHLHB9Q6PI77 547 aa13.18□□□□□ -0.3
VPS28-215ENST00000531924 STAC2Q6ZMT1 411 aa13.18□□□□□ -0.3
VPS28-215ENST00000531924 ZCCHC23Q6ZST2 131 aa13.18□□□□□ -0.3
VPS28-215ENST00000531924 YTHDF3Q7Z739 585 aaKnown RBP13.18□□□□□ -0.3
VPS28-215ENST00000531924 KRTAP1-3Q8IUG1 177 aa13.18□□□□□ -0.3
VPS28-215ENST00000531924 TMCO5AQ8N6Q1 288 aa13.18□□□□□ -0.3
VPS28-215ENST00000531924 ZNF614Q8N883 585 aa13.18□□□□□ -0.3
VPS28-215ENST00000531924 ATP6V1C2Q8NEY4 427 aa13.18□□□□□ -0.3
VPS28-215ENST00000531924 PPP1R14CQ8TAE6 165 aa13.18□□□□□ -0.3
VPS28-215ENST00000531924 TMEM171Q8WVE6 324 aa13.18□□□□□ -0.3
VPS28-215ENST00000531924 MOAP1Q96BY2 351 aa13.18□□□□□ -0.3
VPS28-215ENST00000531924 ADGRG7Q96K78 797 aa13.18□□□□□ -0.3
VPS28-215ENST00000531924 Q96MF0 132 aa13.18□□□□□ -0.3
VPS28-215ENST00000531924 TACO1Q9BSH4 297 aaKnown RBP13.18□□□□□ -0.3
VPS28-215ENST00000531924 C1orf50Q9BV19 199 aa13.18□□□□□ -0.3
VPS28-215ENST00000531924 MECRQ9BV79 373 aa13.18□□□□□ -0.3
VPS28-215ENST00000531924 ACTR6Q9GZN1 396 aa13.18□□□□□ -0.3
VPS28-215ENST00000531924 GIMAP2Q9UG22 337 aa13.18□□□□□ -0.3
VPS28-215ENST00000531924 CARD8Q9Y2G2 431 aa13.18□□□□□ -0.3
VPS28-215ENST00000531924 GPR52Q9Y2T5 361 aa13.18□□□□□ -0.3
VPS28-215ENST00000531924 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.17□□□□□ -0.3
VPS28-215ENST00000531924 H7C1Q1 480 aa13.17□□□□□ -0.3
VPS28-215ENST00000531924 SMAD7O15105 426 aaKnown RBP13.17□□□□□ -0.3
VPS28-215ENST00000531924 SKAP2O75563 359 aaPredicted RBP13.17□□□□□ -0.3
VPS28-215ENST00000531924 C6orf47O95873 294 aa13.17□□□□□ -0.3
VPS28-215ENST00000531924 PRPS1L1P21108 318 aa13.17□□□□□ -0.3
VPS28-215ENST00000531924 PSMA4P25789 261 aaKnown RBP13.17□□□□□ -0.3
VPS28-215ENST00000531924 ELK4P28324 431 aa13.17□□□□□ -0.3
VPS28-215ENST00000531924 SLC7A1P30825 629 aa13.17□□□□□ -0.3
VPS28-215ENST00000531924 SOAT1P35610 550 aa13.17□□□□□ -0.3
VPS28-215ENST00000531924 RNF144AP50876 292 aaPredicted RBP13.17□□□□□ -0.3
VPS28-215ENST00000531924 P2RX1P51575 399 aa13.17□□□□□ -0.3
VPS28-215ENST00000531924 SUMO3P55854 103 aaPredicted RBP13.17□□□□□ -0.3
VPS28-215ENST00000531924 ZNF117Q03924 483 aa13.17□□□□□ -0.3
VPS28-215ENST00000531924 FOXF1Q12946 379 aa13.17□□□□□ -0.3
VPS28-215ENST00000531924 PTGR1Q14914 329 aa13.17□□□□□ -0.3
VPS28-215ENST00000531924 PGS1Q32NB8 556 aa13.17□□□□□ -0.3
VPS28-215ENST00000531924 DCST2Q5T1A1 773 aa13.17□□□□□ -0.3
VPS28-215ENST00000531924 IL23RQ5VWK5 629 aa13.17□□□□□ -0.3
VPS28-215ENST00000531924 PRSS57Q6UWY2 283 aa13.17□□□□□ -0.3
VPS28-215ENST00000531924 ZNF704Q6ZNC4 412 aaPredicted RBP13.17□□□□□ -0.3
VPS28-215ENST00000531924 STEAP2Q8NFT2 490 aa13.17□□□□□ -0.3
VPS28-215ENST00000531924 RFWD2Q8NHY2 731 aa13.17□□□□□ -0.3
VPS28-215ENST00000531924 ROBO4Q8WZ75 1007 aa13.17□□□□□ -0.3
VPS28-215ENST00000531924 CPNE4Q96A23 557 aaPredicted RBP13.17□□□□□ -0.3
VPS28-215ENST00000531924 TUBGCP3Q96CW5 907 aa13.17□□□□□ -0.3
VPS28-215ENST00000531924 NPAS1Q99742 590 aa13.17□□□□□ -0.3
VPS28-215ENST00000531924 HDHD5Q9BXW7 423 aa13.17□□□□□ -0.3
VPS28-215ENST00000531924 CXorf56Q9H5V9 222 aa13.17□□□□□ -0.3
VPS28-215ENST00000531924 SIRT3Q9NTG7 399 aaPredicted RBP13.17□□□□□ -0.3
VPS28-215ENST00000531924 SLC17A7Q9P2U7 560 aa13.17□□□□□ -0.3
VPS28-215ENST00000531924 GPC6Q9Y625 555 aaPredicted RBP13.17□□□□□ -0.3
VPS28-215ENST00000531924 NPIPA5A0A0B4J1W7 369 aa13.16□□□□□ -0.3
VPS28-215ENST00000531924 NPIPA7E9PJI5 369 aa13.16□□□□□ -0.3
VPS28-215ENST00000531924 ZNF195O14628 629 aa13.16□□□□□ -0.3
VPS28-215ENST00000531924 HEXAP06865 529 aa13.16□□□□□ -0.3
VPS28-215ENST00000531924 THBDP07204 575 aa13.16□□□□□ -0.3
VPS28-215ENST00000531924 LINGO3P0C6S8 592 aa13.16□□□□□ -0.3
VPS28-215ENST00000531924 NPIPA8P0DM63 369 aa13.16□□□□□ -0.3
VPS28-215ENST00000531924 IL32P24001 234 aa13.16□□□□□ -0.3
VPS28-215ENST00000531924 ADH6P28332 368 aa13.16□□□□□ -0.3
VPS28-215ENST00000531924 AGTR1P30556 359 aa13.16□□□□□ -0.3
VPS28-215ENST00000531924 CCR4P51679 360 aa13.16□□□□□ -0.3
VPS28-215ENST00000531924 ATP12AP54707 1039 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms