RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 BCKDHAP12694 445 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 ELK4P28324 431 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 EIF1P41567 113 aaKnown RBP10.13□□□□□ -0.79
VPS28-214ENST00000531032 ASMTP46597 345 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 PRIM2P49643 509 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 ZNF844Q08AG5 666 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 PCLAFQ15004 111 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 ZNF239Q16600 458 aaKnown RBP10.13□□□□□ -0.79
VPS28-214ENST00000531032 PDSS1Q5T2R2 415 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 CCNJQ5T5M9 372 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 GTF2IRD2BQ6EKJ0 949 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 R3HCC1LQ7Z5L2 792 aaKnown RBP10.13□□□□□ -0.79
VPS28-214ENST00000531032 GTF2IRD2Q86UP8 949 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 STK32CQ86UX6 486 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 PRIMA1Q86XR5 153 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 C10orf107Q8IVU9 208 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 HOMEZQ8IX15 550 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 LILRA2Q8N149 483 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 ZNF611Q8N823 705 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 OR2W6PQ8NHA6 318 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 RNF128Q8TEB7 428 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 TMEM171Q8WVE6 324 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 JADE3Q92613 823 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 OSTF1Q92882 214 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 OTUB1Q96FW1 271 aaPredicted RBP10.13□□□□□ -0.79
VPS28-214ENST00000531032 PLPPR2Q96GM1 343 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 C16orf58Q96GQ5 468 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 APOPT1Q96IL0 206 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 KLHL15Q96M94 604 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 STACQ99469 402 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 GATA5Q9BWX5 397 aaPredicted RBP10.13□□□□□ -0.79
VPS28-214ENST00000531032 BTBD2Q9BX70 525 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 CXorf56Q9H5V9 222 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 ZCCHC3Q9NUD5 404 aaKnown RBP10.13□□□□□ -0.79
VPS28-214ENST00000531032 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.13□□□□□ -0.79
VPS28-214ENST00000531032 FIS1Q9Y3D6 152 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 V9GYY5 206 aaPredicted RBP10.13□□□□□ -0.79
VPS28-214ENST00000531032 CSPG4Q6UVK1 2322 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 PRR14LQ5THK1 2151 aa10.12□□□□□ -0.79
VPS28-214ENST00000531032 TRIM13O60858 407 aa10.12□□□□□ -0.79
VPS28-214ENST00000531032 PLAUP00749 431 aa10.12□□□□□ -0.79
VPS28-214ENST00000531032 HMGN2P05204 90 aaKnown RBP10.12□□□□□ -0.79
VPS28-214ENST00000531032 FGF4P08620 206 aa10.12□□□□□ -0.79
VPS28-214ENST00000531032 PABPC4LP0CB38 370 aaKnown RBP10.12□□□□□ -0.79
VPS28-214ENST00000531032 DDX5P17844 614 aaKnown RBP10.12□□□□□ -0.79
VPS28-214ENST00000531032 EFNA1P20827 205 aaPredicted RBP10.12□□□□□ -0.79
VPS28-214ENST00000531032 ADH6P28332 368 aa10.12□□□□□ -0.79
VPS28-214ENST00000531032 SHC1P29353 583 aa10.12□□□□□ -0.79
VPS28-214ENST00000531032 CARD18P57730 90 aa10.12□□□□□ -0.79
VPS28-214ENST00000531032 POU6F2P78424 691 aaPredicted RBP10.12□□□□□ -0.79
VPS28-214ENST00000531032 ZNF117Q03924 483 aa10.12□□□□□ -0.79
VPS28-214ENST00000531032 FOXF1Q12946 379 aa10.12□□□□□ -0.79
VPS28-214ENST00000531032 LASP1Q14847 261 aaKnown RBP10.12□□□□□ -0.79
VPS28-214ENST00000531032 UGT3A2Q3SY77 523 aa10.12□□□□□ -0.79
VPS28-214ENST00000531032 GALNTL6Q49A17 601 aa10.12□□□□□ -0.79
VPS28-214ENST00000531032 EMBQ6PCB8 327 aa10.12□□□□□ -0.79
VPS28-214ENST00000531032 LRIG3Q6UXM1 1119 aa10.12□□□□□ -0.79
VPS28-214ENST00000531032 TFAP2EQ6VUC0 442 aa10.12□□□□□ -0.79
VPS28-214ENST00000531032 MTERF4Q7Z6M4 381 aaKnown RBP10.12□□□□□ -0.79
VPS28-214ENST00000531032 WFDC8Q8IUA0 241 aa10.12□□□□□ -0.79
VPS28-214ENST00000531032 GABRG1Q8N1C3 465 aa10.12□□□□□ -0.79
VPS28-214ENST00000531032 PSMA8Q8TAA3 256 aa10.12□□□□□ -0.79
VPS28-214ENST00000531032 ABHD3Q8WU67 409 aa10.12□□□□□ -0.79
VPS28-214ENST00000531032 TWIST2Q8WVJ9 160 aa10.12□□□□□ -0.79
VPS28-214ENST00000531032 CDS1Q92903 461 aa10.12□□□□□ -0.79
VPS28-214ENST00000531032 CPNE4Q96A23 557 aaPredicted RBP10.12□□□□□ -0.79
VPS28-214ENST00000531032 SRXN1Q9BYN0 137 aa10.12□□□□□ -0.79
VPS28-214ENST00000531032 PIGUQ9H490 435 aa10.12□□□□□ -0.79
VPS28-214ENST00000531032 C12orf49Q9H741 205 aa10.12□□□□□ -0.79
VPS28-214ENST00000531032 ATP6V1HQ9UI12 483 aa10.12□□□□□ -0.79
VPS28-214ENST00000531032 ACTL7BQ9Y614 415 aa10.12□□□□□ -0.79
VPS28-214ENST00000531032 USF3Q68DE3 2245 aa10.11□□□□□ -0.79
VPS28-214ENST00000531032 TMEM114B3SHH9 223 aa10.11□□□□□ -0.79
VPS28-214ENST00000531032 TMEM233B4DJY2 109 aa10.11□□□□□ -0.79
VPS28-214ENST00000531032 SCAMP2O15127 329 aaKnown RBP10.11□□□□□ -0.79
VPS28-214ENST00000531032 EFNA2O43921 213 aa10.11□□□□□ -0.79
VPS28-214ENST00000531032 GCM2O75603 506 aaPredicted RBP10.11□□□□□ -0.79
VPS28-214ENST00000531032 CHRNGP07510 517 aa10.11□□□□□ -0.79
VPS28-214ENST00000531032 NUDT17P0C025 328 aa10.11□□□□□ -0.79
VPS28-214ENST00000531032 PCSK6P29122 969 aa10.11□□□□□ -0.79
VPS28-214ENST00000531032 SFTPDP35247 375 aa10.11□□□□□ -0.79
VPS28-214ENST00000531032 HPCAL1P37235 193 aa10.11□□□□□ -0.79
VPS28-214ENST00000531032 RPL3P39023 403 aaKnown RBP10.11□□□□□ -0.79
VPS28-214ENST00000531032 P2RX1P51575 399 aa10.11□□□□□ -0.79
VPS28-214ENST00000531032 SUMO3P55854 103 aaPredicted RBP10.11□□□□□ -0.79
VPS28-214ENST00000531032 CAPRIN1Q14444 709 aaKnown RBP10.11□□□□□ -0.79
VPS28-214ENST00000531032 RNPS1Q15287 305 aaKnown RBP10.11□□□□□ -0.79
VPS28-214ENST00000531032 KLHL26Q53HC5 615 aa10.11□□□□□ -0.79
VPS28-214ENST00000531032 XKR7Q5GH72 579 aa10.11□□□□□ -0.79
VPS28-214ENST00000531032 ADAM5Q6NVV9 412 aa10.11□□□□□ -0.79
VPS28-214ENST00000531032 CDC73Q6P1J9 531 aa10.11□□□□□ -0.79
VPS28-214ENST00000531032 CBLN3Q6UW01 205 aa10.11□□□□□ -0.79
VPS28-214ENST00000531032 ZNF527Q8NB42 609 aa10.11□□□□□ -0.79
VPS28-214ENST00000531032 STEAP2Q8NFT2 490 aa10.11□□□□□ -0.79
VPS28-214ENST00000531032 OR7A2PQ8NGA2 310 aa10.11□□□□□ -0.79
VPS28-214ENST00000531032 PHOSPHO1Q8TCT1 267 aa10.11□□□□□ -0.79
VPS28-214ENST00000531032 ROBO4Q8WZ75 1007 aa10.11□□□□□ -0.79
VPS28-214ENST00000531032 AKAP1Q92667 903 aaKnown RBP eCLIP10.11□□□□□ -0.79
VPS28-214ENST00000531032 S100PBPQ96BU1 408 aa10.11□□□□□ -0.79
VPS28-214ENST00000531032 HDHD5Q9BXW7 423 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms