RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 PGDP52209 483 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 MLLT1Q03111 559 aaPredicted RBP13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 ACY1Q03154 408 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 CFHR1Q03591 330 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 ZNF846Q147U1 533 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 SHBQ15464 509 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 NR0B2Q15466 257 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 SPHARQ15513 63 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 MED22Q15528 200 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 ELAVL1Q15717 326 aaKnown RBP13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 CLPPQ16740 277 aaPredicted RBP13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 PMS2CLQ68D20 193 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 Q7L0L9 218 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 SLC34A3Q8N130 599 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 AMER2Q8N7J2 671 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 BCORP1Q8N888 145 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 OR1L3Q8NH93 324 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 DNAJA4Q8WW22 397 aaPredicted RBP13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 DAZLQ92904 295 aaKnown RBP13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 DACH2Q96NX9 599 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 YIPF2Q9BWQ6 316 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 WDR12Q9GZL7 423 aaKnown RBP13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 CAPN10Q9HC96 672 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 HMG20AQ9NP66 347 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 MKKSQ9NPJ1 570 aaPredicted RBP13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 NTNG1Q9Y2I2 539 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 TMEM184BQ9Y519 407 aaPredicted RBP13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 PCDHGA3Q9Y5H0 932 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 NPIPA5A0A0B4J1W7 369 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 TMEM129A0AVI4 362 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 SERINC4A6NH21 518 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 NPIPA7E9PJI5 369 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 PPM1BO75688 479 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 IGKV1D-16P01601 117 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 NPIPA8P0DM63 369 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 SPTBP11277 2137 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 PRG2P13727 222 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 NR4A1P22736 598 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 MTNR1AP48039 350 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 VBP1P61758 197 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 COPZ1P61923 177 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 LSM11P83369 360 aaKnown RBP eCLIP13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 DMWDQ09019 674 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 MLLT11Q13015 90 aaPredicted RBP13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 AADACL4Q5VUY2 407 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 NXNL2Q5VZ03 156 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 NPSR1Q6W5P4 371 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 LINC00114Q6XXX2 140 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 RABEPKQ7Z6M1 372 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 GID4Q8IVV7 300 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 SHISA5Q8N114 240 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 DEFB123Q8N688 67 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 Q8N9G6 341 aaPredicted RBP13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 FAM181AQ8N9Y4 354 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 OR8D4Q8NGM9 314 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 OR14A16Q8NHC5 309 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 PTPMT1Q8WUK0 201 aaPredicted RBP13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 CNOT9Q92600 299 aaKnown RBP13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 BPIFA2Q96DR5 249 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 ZNF426Q9BUY5 554 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 MMP27Q9H306 513 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 DSN1Q9H410 356 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 PRMT8Q9NR22 394 aaPredicted RBP13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 FBXO8Q9NRD0 319 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 UBQLN4Q9NRR5 601 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 SEC14L4Q9UDX3 406 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 OSGIN1Q9UJX0 560 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 B3GNT3Q9Y2A9 372 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 LSM2Q9Y333 95 aaKnown RBP13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 CLCA3PQ9Y6N3 262 aa13.64□□□□□ -0.23
ECHDC1-220ENST00000528402 A0A1B0GWA3 101 aa13.63□□□□□ -0.23
ECHDC1-220ENST00000528402 TCRBV16S1A1N1A0A5B0 115 aa13.63□□□□□ -0.23
ECHDC1-220ENST00000528402 FAM86C2PA6NEL3 165 aa13.63□□□□□ -0.23
ECHDC1-220ENST00000528402 FRG2CA6NGY1 282 aa13.63□□□□□ -0.23
ECHDC1-220ENST00000528402 CLDN25C9JDP6 229 aa13.63□□□□□ -0.23
ECHDC1-220ENST00000528402 TMX2-CTNND1H3BSU7 103 aa13.63□□□□□ -0.23
ECHDC1-220ENST00000528402 NADKO95544 446 aaPredicted RBP13.63□□□□□ -0.23
ECHDC1-220ENST00000528402 IL33O95760 270 aa13.63□□□□□ -0.23
ECHDC1-220ENST00000528402 IGF2P01344 180 aa13.63□□□□□ -0.23
ECHDC1-220ENST00000528402 HSMCR30P0CW71 290 aa13.63□□□□□ -0.23
ECHDC1-220ENST00000528402 FOLR1P15328 257 aa13.63□□□□□ -0.23
ECHDC1-220ENST00000528402 GADD45AP24522 165 aa13.63□□□□□ -0.23
ECHDC1-220ENST00000528402 GPR4P46093 362 aa13.63□□□□□ -0.23
ECHDC1-220ENST00000528402 RFX3P48380 749 aa13.63□□□□□ -0.23
ECHDC1-220ENST00000528402 SLC37A1P57057 533 aa13.63□□□□□ -0.23
ECHDC1-220ENST00000528402 BNC1Q01954 994 aa13.63□□□□□ -0.23
ECHDC1-220ENST00000528402 KCNAB1Q14722 419 aa13.63□□□□□ -0.23
ECHDC1-220ENST00000528402 KLHL26Q53HC5 615 aa13.63□□□□□ -0.23
ECHDC1-220ENST00000528402 PRPF38BQ5VTL8 546 aaKnown RBP13.63□□□□□ -0.23
ECHDC1-220ENST00000528402 KANSL1Q7Z3B3 1105 aa13.63□□□□□ -0.23
ECHDC1-220ENST00000528402 ZAR1Q86SH2 424 aa13.63□□□□□ -0.23
ECHDC1-220ENST00000528402 LNX2Q8N448 690 aa13.63□□□□□ -0.23
ECHDC1-220ENST00000528402 ZNF614Q8N883 585 aa13.63□□□□□ -0.23
ECHDC1-220ENST00000528402 PLPP5Q8NEB5 264 aa13.63□□□□□ -0.23
ECHDC1-220ENST00000528402 OR4N2Q8NGD1 307 aa13.63□□□□□ -0.23
ECHDC1-220ENST00000528402 OR52I1Q8NGK6 324 aa13.63□□□□□ -0.23
ECHDC1-220ENST00000528402 OR4C6Q8NH72 309 aa13.63□□□□□ -0.23
ECHDC1-220ENST00000528402 ZNF501Q96CX3 271 aaPredicted RBP13.63□□□□□ -0.23
ECHDC1-220ENST00000528402 RNFT2Q96EX2 444 aa13.63□□□□□ -0.23
ECHDC1-220ENST00000528402 SH3YL1Q96HL8 342 aaPredicted RBP13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 100.9 ms