RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 DDX28Q9NUL7 540 aaKnown RBP19.71■□□□□ 0.75
VPS28-205ENST00000526204 NDRG2Q9UN36 371 aaKnown RBP19.71■□□□□ 0.75
VPS28-205ENST00000526204 DOCK8Q8NF50 2099 aa19.71■□□□□ 0.75
VPS28-205ENST00000526204 ZNF860A6NHJ4 632 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 C2orf74A8MZ97 194 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 PLA2G10O15496 165 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 RNF13O43567 381 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 FGF17O60258 216 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 SLC19A2O60779 497 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 LDB3O75112 727 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 SOX30O94993 753 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 LYPD3O95274 346 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 TBXA2RP21731 343 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 FXYD6P3P58550 94 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 IFITM2Q01629 132 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 ZNF800Q2TB10 664 aaPredicted RBP eCLIP19.7■□□□□ 0.74
VPS28-205ENST00000526204 GARNL3Q5VVW2 1013 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 PFN4Q8NHR9 129 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 ENKURQ8TC29 256 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 BPIFA2Q96DR5 249 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 TP63Q9H3D4 680 aaPredicted RBP19.7■□□□□ 0.74
VPS28-205ENST00000526204 RNF121Q9H920 327 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 CMC2Q9NRP2 79 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 TMEM74BQ9NUR3 256 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 CLDND1Q9NY35 253 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 KCNE5Q9UJ90 142 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 CD8B2A6NJW9 211 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 SLC22A31A6NKX4 558 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 CENPXA8MT69 81 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 GTPBP1O00178 669 aaKnown RBP19.7■□□□□ 0.74
VPS28-205ENST00000526204 CYR61O00622 381 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 PEX12O00623 359 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 LINC01565O15544 149 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 CD8BP10966 210 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 CD53P19397 219 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 APEX1P27695 318 aaKnown RBP19.7■□□□□ 0.74
VPS28-205ENST00000526204 SSTR4P31391 388 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 BMP8BP34820 402 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 MTNR1BP49286 362 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 YPEL5P62699 121 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 PRICKLE4Q2TBC4 344 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 CCDC92Q53HC0 331 aaPredicted RBP19.7■□□□□ 0.74
VPS28-205ENST00000526204 C9orf50Q5SZB4 431 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 MZT2BQ6NZ67 158 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 TMEM91Q6ZNR0 172 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 BMP8AQ7Z5Y6 402 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 BAHD1Q8TBE0 780 aaPredicted RBP19.7■□□□□ 0.74
VPS28-205ENST00000526204 NACC2Q96BF6 587 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 ALG8Q9BVK2 526 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 TRIM36Q9NQ86 728 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 MED31Q9Y3C7 131 aa19.7■□□□□ 0.74
VPS28-205ENST00000526204 DAPL1A0PJW8 107 aa19.69■□□□□ 0.74
VPS28-205ENST00000526204 FAM221BA6H8Z2 402 aa19.69■□□□□ 0.74
VPS28-205ENST00000526204 BRINP1O60477 761 aa19.69■□□□□ 0.74
VPS28-205ENST00000526204 COQ9O75208 318 aa19.69■□□□□ 0.74
VPS28-205ENST00000526204 EGFP01133 1207 aa19.69■□□□□ 0.74
VPS28-205ENST00000526204 PTNP21246 168 aa19.69■□□□□ 0.74
VPS28-205ENST00000526204 MYL9P24844 172 aa19.69■□□□□ 0.74
VPS28-205ENST00000526204 MAP3K8P41279 467 aa19.69■□□□□ 0.74
VPS28-205ENST00000526204 POU6F2P78424 691 aaPredicted RBP19.69■□□□□ 0.74
VPS28-205ENST00000526204 GALEQ14376 348 aa19.69■□□□□ 0.74
VPS28-205ENST00000526204 QPRTQ15274 297 aa19.69■□□□□ 0.74
VPS28-205ENST00000526204 TBRG1Q3YBR2 411 aa19.69■□□□□ 0.74
VPS28-205ENST00000526204 AMZ1Q400G9 498 aa19.69■□□□□ 0.74
VPS28-205ENST00000526204 ZNF613Q6PF04 617 aa19.69■□□□□ 0.74
VPS28-205ENST00000526204 GATAD2AQ86YP4 633 aa19.69■□□□□ 0.74
VPS28-205ENST00000526204 FAM3CQ92520 227 aa19.69■□□□□ 0.74
VPS28-205ENST00000526204 ZC3HAV1LQ96H79 300 aaKnown RBP19.69■□□□□ 0.74
VPS28-205ENST00000526204 ZNF559Q9BR84 538 aa19.69■□□□□ 0.74
VPS28-205ENST00000526204 ISG20L2Q9H9L3 353 aaKnown RBP19.69■□□□□ 0.74
VPS28-205ENST00000526204 ATP13A2Q9NQ11 1180 aa19.69■□□□□ 0.74
VPS28-205ENST00000526204 C20orf141Q9NUB4 165 aa19.69■□□□□ 0.74
VPS28-205ENST00000526204 MAT2BQ9NZL9 334 aa19.69■□□□□ 0.74
VPS28-205ENST00000526204 ATG2AQ2TAZ0 1938 aa19.69■□□□□ 0.74
VPS28-205ENST00000526204 FAM172BPA6NC97 362 aa19.69■□□□□ 0.74
VPS28-205ENST00000526204 F8A1P23610 371 aa19.69■□□□□ 0.74
VPS28-205ENST00000526204 ILF3Q12906 894 aaKnown RBP eCLIP19.69■□□□□ 0.74
VPS28-205ENST00000526204 ALG11Q2TAA5 492 aa19.69■□□□□ 0.74
VPS28-205ENST00000526204 SMARCD3Q6STE5 483 aa19.69■□□□□ 0.74
VPS28-205ENST00000526204 TP53INP1Q96A56 240 aa19.69■□□□□ 0.74
VPS28-205ENST00000526204 MRGPRX1Q96LB2 322 aa19.69■□□□□ 0.74
VPS28-205ENST00000526204 PBX4Q9BYU1 374 aa19.69■□□□□ 0.74
VPS28-205ENST00000526204 TMEM27Q9HBJ8 222 aa19.69■□□□□ 0.74
VPS28-205ENST00000526204 FBXO34Q9NWN3 711 aa19.69■□□□□ 0.74
VPS28-205ENST00000526204 SIGLEC7Q9Y286 467 aa19.69■□□□□ 0.74
VPS28-205ENST00000526204 MRPS2Q9Y399 296 aaKnown RBP19.69■□□□□ 0.74
VPS28-205ENST00000526204 C2orf92A0A1B0GVN3 265 aa19.68■□□□□ 0.74
VPS28-205ENST00000526204 SHISA3A0PJX4 238 aa19.68■□□□□ 0.74
VPS28-205ENST00000526204 PRR23D1E9PI22 279 aaPredicted RBP19.68■□□□□ 0.74
VPS28-205ENST00000526204 NCR1O76036 304 aa19.68■□□□□ 0.74
VPS28-205ENST00000526204 PRR23D2P0DMB1 279 aaPredicted RBP19.68■□□□□ 0.74
VPS28-205ENST00000526204 CTHP32929 405 aa19.68■□□□□ 0.74
VPS28-205ENST00000526204 KIR2DL3P43628 341 aa19.68■□□□□ 0.74
VPS28-205ENST00000526204 MAP2K3P46734 347 aa19.68■□□□□ 0.74
VPS28-205ENST00000526204 CTBP2P56545 445 aa19.68■□□□□ 0.74
VPS28-205ENST00000526204 FOXK2Q01167 660 aa19.68■□□□□ 0.74
VPS28-205ENST00000526204 IL18Q14116 193 aa19.68■□□□□ 0.74
VPS28-205ENST00000526204 PLET1Q6UQ28 207 aa19.68■□□□□ 0.74
VPS28-205ENST00000526204 RNF44Q7L0R7 432 aa19.68■□□□□ 0.74
VPS28-205ENST00000526204 GPALPP1Q8IXQ4 340 aa19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms