RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 MTCH1Q9NZJ7 389 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 CYTH4Q9UIA0 394 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 ENPP5Q9UJA9 477 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 TMED3Q9Y3Q3 217 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 ATG4BQ9Y4P1 393 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 GOLGA8QA0A0J9YX86 632 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 A0A1B0GUV1 79 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 TMEM210A6NLX4 147 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 PRSS46E5RG02 174 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 NPIPA2E9PIF3 369 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 OVOL3O00110 214 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 PDLIM1O00151 329 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 WWP2O00308 870 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 ACOT8O14734 319 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 KDELR3O43731 214 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 GLRA3O75311 464 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 PRKRAO75569 313 aaKnown RBP4.21□□□□□ -1.74
CD44-220ENST00000525688 NEBLO76041 1014 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 SYNGR4O95473 234 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 FTH1P02794 183 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 RETP07949 1114 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 FGF3P11487 239 aaPredicted RBP4.21□□□□□ -1.74
CD44-220ENST00000525688 CCNB1P14635 433 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 CPN1P15169 458 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 B4GALT1P15291 398 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 DGKAP23743 735 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 PPP1R2P41236 205 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 FHITP49789 147 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 VAMP7P51809 220 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 NAPAP54920 295 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 NLRP11P59045 1033 aaKnown RBP4.21□□□□□ -1.74
CD44-220ENST00000525688 B3GALT5-AS1P59052 145 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 TNNC1P63316 161 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 CSNK1G2P78368 415 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 ZFP36L1Q07352 338 aaKnown RBP4.21□□□□□ -1.74
CD44-220ENST00000525688 KLC1Q07866 573 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 FADDQ13158 208 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 DGCR6Q14129 220 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 PON2Q15165 354 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 P2RY14Q15391 338 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 STX1AQ16623 288 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 EOGTQ5NDL2 527 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 THEM4Q5T1C6 240 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 ZNF324BQ6AW86 544 aaPredicted RBP4.21□□□□□ -1.74
CD44-220ENST00000525688 ZNF770Q6IQ21 691 aaPredicted RBP4.21□□□□□ -1.74
CD44-220ENST00000525688 FAM166AQ6J272 317 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 APOBEC3HQ6NTF7 200 aaKnown RBP4.21□□□□□ -1.74
CD44-220ENST00000525688 PPP1R2P3Q6NXS1 205 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 RNASEKQ6P5S7 137 aaKnown RBP4.21□□□□□ -1.74
CD44-220ENST00000525688 SLC22A16Q86VW1 577 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 APOBEC3FQ8IUX4 373 aaKnown RBP4.21□□□□□ -1.74
CD44-220ENST00000525688 LRRC8AQ8IWT6 810 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 NELFCDQ8IXH7 590 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 MMD2Q8IY49 270 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 PQLC3Q8N755 202 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 ZNF781Q8N8C0 355 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 MAPKAPK5-AS1Q8N8E1 139 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 CEP112Q8N8E3 955 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 FAM83FQ8NEG4 500 aaPredicted RBP4.21□□□□□ -1.74
CD44-220ENST00000525688 OR7G1Q8NGA0 311 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 OR11H4Q8NGC9 324 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 OR13C9Q8NGT0 318 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 LMO3Q8TAP4 145 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 M1APQ8TC57 530 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 DTX3LQ8TDB6 740 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 SAP25Q8TEE9 199 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 PHLDA1Q8WV24 401 aaPredicted RBP4.21□□□□□ -1.74
CD44-220ENST00000525688 SPRYD4Q8WW59 207 aaPredicted RBP4.21□□□□□ -1.74
CD44-220ENST00000525688 SENP5Q96HI0 755 aaPredicted RBP4.21□□□□□ -1.74
CD44-220ENST00000525688 WACQ9BTA9 647 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 PRRG4Q9BZD6 226 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 LAT2Q9GZY6 243 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 GAL3ST2Q9H3Q3 398 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 DCLRE1BQ9H816 532 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 ELOVL3Q9HB03 270 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 CSNK1G1Q9HCP0 422 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 MRPS30Q9NP92 439 aaKnown RBP4.21□□□□□ -1.74
CD44-220ENST00000525688 A4GALTQ9NPC4 353 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 ACOXLQ9NUZ1 547 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 NKIRAS1Q9NYS0 192 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 PTTG2Q9NZH5 202 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 IL37Q9NZH6 218 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 ZKSCAN7Q9P0L1 754 aaPredicted RBP4.21□□□□□ -1.74
CD44-220ENST00000525688 STOX2Q9P2F5 926 aaPredicted RBP4.21□□□□□ -1.74
CD44-220ENST00000525688 RCOR3Q9P2K3 495 aaPredicted RBP4.21□□□□□ -1.74
CD44-220ENST00000525688 ZNF639Q9UID6 485 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 NOCTQ9UK39 431 aaKnown RBP4.21□□□□□ -1.74
CD44-220ENST00000525688 RUVBL2Q9Y230 463 aaKnown RBP4.21□□□□□ -1.74
CD44-220ENST00000525688 RASD1Q9Y272 281 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 LRP12Q9Y561 859 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 PCDHGB1Q9Y5G3 927 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 CNTNAP1P78357 1384 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 TRPM7Q96QT4 1865 aa4.21□□□□□ -1.74
CD44-220ENST00000525688 ESYT2A0FGR8 921 aa4.2□□□□□ -1.74
CD44-220ENST00000525688 GOLGA8IPA6NC78 632 aa4.2□□□□□ -1.74
CD44-220ENST00000525688 C16orf97H3BN30 126 aa4.2□□□□□ -1.74
CD44-220ENST00000525688 BCKDKO14874 412 aa4.2□□□□□ -1.74
CD44-220ENST00000525688 ARPC2O15144 300 aa4.2□□□□□ -1.74
CD44-220ENST00000525688 EIF3HO15372 352 aaKnown RBP eCLIP4.2□□□□□ -1.74
CD44-220ENST00000525688 OR1F1O43749 312 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms