RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 CT62P0C5K7 136 aa13.76□□□□□ -0.21
NUP54-217ENST00000514987 ZGLP1P0C6A0 271 aa13.76□□□□□ -0.21
NUP54-217ENST00000514987 GKN3PP0CG01 181 aa13.76□□□□□ -0.21
NUP54-217ENST00000514987 MAKP20794 623 aa13.76□□□□□ -0.21
NUP54-217ENST00000514987 FABP5Q01469 135 aa13.76□□□□□ -0.21
NUP54-217ENST00000514987 TFF2Q03403 129 aa13.76□□□□□ -0.21
NUP54-217ENST00000514987 MXD1Q05195 221 aa13.76□□□□□ -0.21
NUP54-217ENST00000514987 SCN1BQ07699 218 aa13.76□□□□□ -0.21
NUP54-217ENST00000514987 PRTGQ2VWP7 1150 aa13.76□□□□□ -0.21
NUP54-217ENST00000514987 COL13A1Q5TAT6 717 aaPredicted RBP13.76□□□□□ -0.21
NUP54-217ENST00000514987 DESI1Q6ICB0 168 aa13.76□□□□□ -0.21
NUP54-217ENST00000514987 NIPAL3Q6P499 406 aa13.76□□□□□ -0.21
NUP54-217ENST00000514987 METAP1DQ6UB28 335 aaPredicted RBP13.76□□□□□ -0.21
NUP54-217ENST00000514987 ZNF550Q7Z398 422 aa13.76□□□□□ -0.21
NUP54-217ENST00000514987 AKAP14Q86UN6 197 aa13.76□□□□□ -0.21
NUP54-217ENST00000514987 LAX1Q8IWV1 398 aa13.76□□□□□ -0.21
NUP54-217ENST00000514987 CMIPQ8IY22 773 aa13.76□□□□□ -0.21
NUP54-217ENST00000514987 ARHGEF39Q8N4T4 335 aa13.76□□□□□ -0.21
NUP54-217ENST00000514987 OR52R1Q8NGF1 315 aa13.76□□□□□ -0.21
NUP54-217ENST00000514987 SLC2A12Q8TD20 617 aa13.76□□□□□ -0.21
NUP54-217ENST00000514987 TOE1Q96GM8 510 aaKnown RBP13.76□□□□□ -0.21
NUP54-217ENST00000514987 KATNB1Q9BVA0 655 aa13.76□□□□□ -0.21
NUP54-217ENST00000514987 SRRQ9GZT4 340 aa13.76□□□□□ -0.21
NUP54-217ENST00000514987 UCK1Q9HA47 277 aa13.76□□□□□ -0.21
NUP54-217ENST00000514987 KCNE5Q9UJ90 142 aa13.76□□□□□ -0.21
NUP54-217ENST00000514987 A0A1W2PPC4 97 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 A0A1W2PQL4 384 aaPredicted RBP13.75□□□□□ -0.21
NUP54-217ENST00000514987 GXYLT2A0PJZ3 443 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 RIIAD1A6NNX1 92 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 PRR23D1E9PI22 279 aaPredicted RBP13.75□□□□□ -0.21
NUP54-217ENST00000514987 CLDN4O14493 209 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 RDH16O75452 317 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 PRR23D2P0DMB1 279 aaPredicted RBP13.75□□□□□ -0.21
NUP54-217ENST00000514987 ST6GAL1P15907 406 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 TBXA2RP21731 343 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 TMED10P49755 219 aaKnown RBP13.75□□□□□ -0.21
NUP54-217ENST00000514987 BIKQ13323 160 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 COL19A1Q14993 1142 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 TRAM1Q15629 374 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 GLYR1Q49A26 553 aaPredicted RBP13.75□□□□□ -0.21
NUP54-217ENST00000514987 PRPF38BQ5VTL8 546 aaKnown RBP13.75□□□□□ -0.21
NUP54-217ENST00000514987 MZT2AQ6P582 158 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 WDR88Q6ZMY6 472 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 SHFQ7M4L6 423 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 ZNF438Q7Z4V0 828 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 EGFL6Q8IUX8 553 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 LSMEM1Q8N8F7 131 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 OR9A4Q8NGU2 314 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 DNAJA4Q8WW22 397 aaPredicted RBP13.75□□□□□ -0.21
NUP54-217ENST00000514987 TCTN2Q96GX1 697 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 RBM18Q96H35 190 aaKnown RBP13.75□□□□□ -0.21
NUP54-217ENST00000514987 LRFN5Q96NI6 719 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 ZNF649Q9BS31 505 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 G6PC3Q9BUM1 346 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 KCNN2Q9H2S1 579 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 FOLH1BQ9HBA9 442 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 ABCB9Q9NP78 766 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 FBXO34Q9NWN3 711 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 WSB2Q9NYS7 404 aaPredicted RBP13.75□□□□□ -0.21
NUP54-217ENST00000514987 SLC35A3Q9Y2D2 325 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 A0A0B4J2E0 115 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 A0A1B0GX12 115 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 HTR3EA5X5Y0 456 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 FABP12A6NFH5 140 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 SOCS6O14544 535 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 CASKO14936 926 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 IFNGP01579 166 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 TAS2R43P59537 309 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 IGLV3-21P80748 117 aaPredicted RBP13.75□□□□□ -0.21
NUP54-217ENST00000514987 STX4Q12846 297 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 GAS6Q14393 721 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 LRIT3Q3SXY7 679 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 PDZK1Q5T2W1 519 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 PLBD1Q6P4A8 553 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 FAM131AQ6UXB0 335 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 GPALPP1Q8IXQ4 340 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 ARIH2OSQ8N7S6 290 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 ATP6V1C2Q8NEY4 427 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 BBS1Q8NFJ9 593 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 OR6C4Q8NGE1 309 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 OR4C6Q8NH72 309 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 PFN4Q8NHR9 129 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 SPRYD4Q8WW59 207 aaPredicted RBP13.75□□□□□ -0.21
NUP54-217ENST00000514987 OIT3Q8WWZ8 545 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 RIT1Q92963 219 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 EFHD2Q96C19 240 aaPredicted RBP13.75□□□□□ -0.21
NUP54-217ENST00000514987 TM9SF2Q99805 663 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 PELOQ9BRX2 385 aaKnown RBP13.75□□□□□ -0.21
NUP54-217ENST00000514987 IFT27Q9BW83 186 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.75□□□□□ -0.21
NUP54-217ENST00000514987 BABAM2Q9NXR7 383 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 ADAM30Q9UKF2 790 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 ITGB1BP2Q9UKP3 347 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 CYP8B1Q9UNU6 501 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 SIGLEC7Q9Y286 467 aa13.75□□□□□ -0.21
NUP54-217ENST00000514987 C2CD4DB7Z1M9 353 aa13.74□□□□□ -0.21
NUP54-217ENST00000514987 H3BQ06 376 aaPredicted RBP13.74□□□□□ -0.21
NUP54-217ENST00000514987 SEC14L5O43304 696 aa13.74□□□□□ -0.21
NUP54-217ENST00000514987 PRAMEF2O60811 474 aa13.74□□□□□ -0.21
NUP54-217ENST00000514987 ZNF217O75362 1048 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms