RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 GAPDHSO14556 408 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 ARPC1BO15143 372 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 MAS1P04201 325 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 ATP5A1P25705 553 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 HLA-DMAP28067 261 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 PSMB10P40306 273 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 SLC6A11P48066 632 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 RAE1P78406 368 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 RIPPLY1Q0D2K3 151 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 GPM6BQ13491 265 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 ATXN7L3Q14CW9 347 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 OR1Q1Q15612 314 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 ITPRIPL2Q3MIP1 535 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 C18orf63Q68DL7 685 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 LRRN1Q6UXK5 716 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 MBOAT2Q6ZWT7 520 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 CAMKMTQ7Z624 323 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 CCDC120Q96HB5 630 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 SGPP1Q9BX95 441 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 TBL1XR1Q9BZK7 514 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 SLC25A18Q9H1K4 315 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 PLSCR3Q9NRY6 295 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 ASB6Q9NWX5 421 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 MLXQ9UH92 298 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 LGI1O95970 557 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 ALDOBP05062 364 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 CEBPBP17676 345 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 VAMP1P23763 118 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 ETV6P41212 452 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 RBM34P42696 430 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 E2F1Q01094 437 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 PUDPQ08623 228 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 SFXN4Q6P4A7 337 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 FIGLAQ6QHK4 219 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 OR52N1Q8NH53 320 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 METTL21AQ8WXB1 218 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 SMARCD2Q92925 531 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 PMEPA1Q969W9 287 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 GAL3ST3Q96A11 431 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 SLC38A3Q99624 504 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 C7orf50Q9BRJ6 194 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 G6PC3Q9BUM1 346 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 SLC17A9Q9BYT1 436 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 SCP2D1Q9UJQ7 156 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 TRIM64A6NGJ6 449 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 C2orf74A8MZ97 194 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 HOXC11O43248 304 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 HOXB2P14652 356 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 SNRPBP14678 240 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 FPR3P25089 353 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 IGFALSP35858 605 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 OR3A3P47888 321 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 SMCO1Q147U7 214 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 DCST2Q5T1A1 773 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 FAM180AQ6UWF9 173 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 CREB3L2Q70SY1 520 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 CSNK1A1LQ8N752 337 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 OR4M1Q8NGD0 313 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 THAP6Q8TBB0 222 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 TMEM255BQ8WV15 326 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 SERINC2Q96SA4 455 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 ZDHHC5Q9C0B5 715 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 ABRACLQ9P1F3 81 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 RABL2AQ9UBK7 228 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 RABL2BQ9UNT1 228 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 TRAPPC4Q9Y296 219 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 A0A0G2JMP0 313 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 A0A0X1KG70 313 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 KHNYNO15037 678 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 SSX4O60224 188 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 PRAF2O60831 178 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 TNFP01375 233 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 C1QBP02746 253 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 EVI2BP34910 448 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 IRS1P35568 1242 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 LTB4RQ15722 352 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 LEG1Q6P5S2 330 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 ZC3H14Q6PJT7 736 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 OR4M2Q8NGB6 313 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 OR13C2Q8NGS9 318 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 C11orf49Q9H6J7 331 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 SEMA4GQ9NTN9 838 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 FTSJ1Q9UET6 329 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 ATG4BQ9Y4P1 393 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 LTBP1Q14766 1721 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 IGLV3-16A0A075B6K0 115 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 B4DGG1 531 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 TNFRSF10AO00220 468 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 TMPRSS11DO60235 418 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 KCNJ13O60928 360 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 CSNK1G2P78368 415 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 SSX1Q16384 188 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 LRRC37A5PQ49AS3 106 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 ZNF322Q6U7Q0 402 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 NUP54Q7Z3B4 507 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 GDF7Q7Z4P5 450 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 GOT1L1Q8NHS2 421 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 ABHD4Q8TB40 342 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 GIMAP1Q8WWP7 306 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 THRSPQ92748 146 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms