RNA–Protein interactions for RNA: ENST00000509330.5

PHF3-209, Transcript of PHD finger protein 3, humanhuman

TSL 1 (best) BASIC

Gene PHF3, Length 2,969 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-209ENST00000509330 SMOC1Q9H4F8 434 aa13.74□□□□□ -0.21
PHF3-209ENST00000509330 DNAJB12Q9NXW2 375 aaKnown RBP13.74□□□□□ -0.21
PHF3-209ENST00000509330 EPHA6Q9UF33 1036 aa13.74□□□□□ -0.21
PHF3-209ENST00000509330 RPL36Q9Y3U8 105 aaKnown RBP13.74□□□□□ -0.21
PHF3-209ENST00000509330 TRIM64BA6NI03 449 aa13.74□□□□□ -0.21
PHF3-209ENST00000509330 CSO75390 466 aaKnown RBP13.74□□□□□ -0.21
PHF3-209ENST00000509330 RGS6P49758 472 aa13.74□□□□□ -0.21
PHF3-209ENST00000509330 CD300LDQ6UXZ3 194 aa13.74□□□□□ -0.21
PHF3-209ENST00000509330 MED25Q71SY5 747 aa13.74□□□□□ -0.21
PHF3-209ENST00000509330 IGFN1Q86VF2 1251 aa13.74□□□□□ -0.21
PHF3-209ENST00000509330 LINC00471Q8N535 108 aa13.74□□□□□ -0.21
PHF3-209ENST00000509330 ZFP41Q8N8Y5 198 aa13.74□□□□□ -0.21
PHF3-209ENST00000509330 OR4F15Q8NGB8 312 aa13.74□□□□□ -0.21
PHF3-209ENST00000509330 FANK1Q8TC84 345 aa13.74□□□□□ -0.21
PHF3-209ENST00000509330 TMEM203Q969S6 136 aa13.74□□□□□ -0.21
PHF3-209ENST00000509330 RNFT2Q96EX2 444 aa13.74□□□□□ -0.21
PHF3-209ENST00000509330 TMEM80Q96HE8 168 aa13.74□□□□□ -0.21
PHF3-209ENST00000509330 LMF2Q9BU23 707 aaKnown RBP13.74□□□□□ -0.21
PHF3-209ENST00000509330 NXF5Q9H1B4 397 aaKnown RBP13.74□□□□□ -0.21
PHF3-209ENST00000509330 DCSTAMPQ9H295 470 aa13.74□□□□□ -0.21
PHF3-209ENST00000509330 OR52D1Q9H346 318 aa13.74□□□□□ -0.21
PHF3-209ENST00000509330 TMEM27Q9HBJ8 222 aa13.74□□□□□ -0.21
PHF3-209ENST00000509330 MEPEQ9NQ76 525 aaPredicted RBP13.74□□□□□ -0.21
PHF3-209ENST00000509330 WDR70Q9NW82 654 aa13.74□□□□□ -0.21
PHF3-209ENST00000509330 ERGIC3Q9Y282 383 aa13.74□□□□□ -0.21
PHF3-209ENST00000509330 TP53BP1Q12888 1972 aaPredicted RBP13.73□□□□□ -0.21
PHF3-209ENST00000509330 BDP1A6H8Y1 2624 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 NGFRP08138 427 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 ZGLP1P0C6A0 271 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 FPR3P25089 353 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 CD79BP40259 229 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 SLC15A1P46059 708 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 SLC9A3P48764 834 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 SLC16A1P53985 500 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 EPHA4P54764 986 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 ALG10BQ5I7T1 473 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 THSD4Q6ZMP0 1018 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 SLC46A3Q7Z3Q1 461 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 TMCO5AQ8N6Q1 288 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 POGLUT1Q8NBL1 392 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 ANKK1Q8NFD2 765 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 OR52I1Q8NGK6 324 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 SH3YL1Q96HL8 342 aaPredicted RBP13.73□□□□□ -0.21
PHF3-209ENST00000509330 SLC38A2Q96QD8 506 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 KLHDC3Q9BQ90 382 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 HHATLQ9HCP6 504 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 PMF1-BGLAPU3KQ54 211 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 H0YIG0 161 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 H3BMH7 237 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 SOCS6O14544 535 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 ARHGAP33O14559 1287 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 SIGLEC6O43699 453 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 TIAF1O95411 115 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 CSTAP01040 98 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 FBLP22087 321 aaKnown RBP13.73□□□□□ -0.21
PHF3-209ENST00000509330 ETV5P41161 510 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 ETV1P50549 477 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 FXYD6P3P58550 94 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 IRF3Q14653 427 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 HLA-BQ31612 363 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 FAM69BQ5VUD6 431 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 ZNF574Q6ZN55 896 aaPredicted RBP13.73□□□□□ -0.21
PHF3-209ENST00000509330 LHFPL3Q86UP9 236 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 UBALD2Q8IYN6 164 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 EID2Q8N6I1 236 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 ZNF615Q8N8J6 731 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 TMEM163Q8TC26 289 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 FCGR1BQ92637 280 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 BPIFA2Q96DR5 249 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 ZNF304Q9HCX3 659 aa13.73□□□□□ -0.21
PHF3-209ENST00000509330 SIDT1Q9NXL6 827 aaKnown RBP13.73□□□□□ -0.21
PHF3-209ENST00000509330 MYL12BO14950 172 aa13.72□□□□□ -0.21
PHF3-209ENST00000509330 SLC22A1O15245 554 aa13.72□□□□□ -0.21
PHF3-209ENST00000509330 SERPINI2O75830 405 aa13.72□□□□□ -0.21
PHF3-209ENST00000509330 AK1P00568 194 aa13.72□□□□□ -0.21
PHF3-209ENST00000509330 CLPSP04118 112 aa13.72□□□□□ -0.21
PHF3-209ENST00000509330 CRYZQ08257 329 aaKnown RBP13.72□□□□□ -0.21
PHF3-209ENST00000509330 LIPKQ5VXJ0 399 aa13.72□□□□□ -0.21
PHF3-209ENST00000509330 POMZP3Q6PJE2 187 aa13.72□□□□□ -0.21
PHF3-209ENST00000509330 KIRREL2Q6UWL6 708 aa13.72□□□□□ -0.21
PHF3-209ENST00000509330 C16orf47Q6ZP98 133 aaPredicted RBP13.72□□□□□ -0.21
PHF3-209ENST00000509330 SMAP2Q8WU79 429 aaPredicted RBP13.72□□□□□ -0.21
PHF3-209ENST00000509330 TRUB1Q8WWH5 349 aaKnown RBP13.72□□□□□ -0.21
PHF3-209ENST00000509330 ADOQ96SZ5 270 aa13.72□□□□□ -0.21
PHF3-209ENST00000509330 TBX5Q99593 518 aa13.72□□□□□ -0.21
PHF3-209ENST00000509330 SH3GL3Q99963 347 aa13.72□□□□□ -0.21
PHF3-209ENST00000509330 CNOT2Q9NZN8 540 aaKnown RBP13.72□□□□□ -0.21
PHF3-209ENST00000509330 HEATR5AQ86XA9 2040 aa13.72□□□□□ -0.21
PHF3-209ENST00000509330 FITM1A5D6W6 292 aa13.72□□□□□ -0.21
PHF3-209ENST00000509330 UNC119BA6NIH7 251 aa13.72□□□□□ -0.21
PHF3-209ENST00000509330 MAGEB3O15480 346 aa13.72□□□□□ -0.21
PHF3-209ENST00000509330 HBQ1P09105 142 aa13.72□□□□□ -0.21
PHF3-209ENST00000509330 HPGDP15428 266 aa13.72□□□□□ -0.21
PHF3-209ENST00000509330 EPHA8P29322 1005 aaPredicted RBP13.72□□□□□ -0.21
PHF3-209ENST00000509330 ATP6V1E1P36543 226 aa13.72□□□□□ -0.21
PHF3-209ENST00000509330 CDH11P55287 796 aa13.72□□□□□ -0.21
PHF3-209ENST00000509330 IGLV3-21P80748 117 aaPredicted RBP13.72□□□□□ -0.21
PHF3-209ENST00000509330 FUT7Q11130 342 aa13.72□□□□□ -0.21
PHF3-209ENST00000509330 SSX1Q16384 188 aa13.72□□□□□ -0.21
PHF3-209ENST00000509330 PGGHGQ32M88 737 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms