RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 PTCHD1Q96NR3 888 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 ZNF300Q96RE9 604 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 ULBP3Q9BZM4 244 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 ACTL8Q9H568 366 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 AKIRIN1Q9H9L7 192 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 BRF2Q9HAW0 419 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 CTPS2Q9NRF8 586 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 SLC39A1Q9NY26 324 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 ABCG2Q9UNQ0 655 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 CCL27Q9Y4X3 112 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 ALG5Q9Y673 324 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 ZNF780BQ9Y6R6 833 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 IGHV3-20A0A0C4DH32 117 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 A0A1W2PR48 441 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 FAM234BA2RU67 622 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 LEUTXA8MZ59 168 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 TPST2O60704 377 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 TBX6O95947 436 aaPredicted RBP8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 SPINK2P20155 84 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 PRPS1L1P21108 318 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 ERP29P30040 261 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 BSGP35613 385 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 AHRP35869 848 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 AVPR1BP47901 424 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 C22orf42Q6IC83 251 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 OLIG3Q7RTU3 272 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 PPP1R3BQ86XI6 285 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 NETO1Q8TDF5 533 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 C2CD4CQ8TF44 421 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 ZFPM2Q8WW38 1151 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 REEP4Q9H6H4 257 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 RNF121Q9H920 327 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 SMURF1Q9HCE7 757 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 FBXO8Q9NRD0 319 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 LRP4O75096 1905 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 SVILO95425 2214 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 WDFY3Q8IZQ1 3526 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 LY6G6EA0A0G2JKS1 128 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 A0A1W2PQL4 384 aaPredicted RBP8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 D6RAR5 112 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 FOXE1O00358 373 aaPredicted RBP8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 TO15178 435 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 GMFGO60234 142 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 PCDHGA12O60330 932 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 NTSP30990 170 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 GPR3P46089 330 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 ASMTP46597 345 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 XKP51811 444 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 MAP2K6P52564 334 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 MAB21L1Q13394 359 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 HES3Q5TGS1 186 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 PWWP2BQ6NUJ5 590 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 TMEM107Q6UX40 140 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 BCDIN3DQ7Z5W3 292 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 ZFP82Q8N141 532 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 AGBL5Q8NDL9 886 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 ST8SIA4Q92187 359 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 RAB8BQ92930 207 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 GAL3ST3Q96A11 431 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 CMKLR1Q99788 373 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 SCPEP1Q9HB40 452 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 MRPL15Q9P015 296 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 MKLN1Q9UL63 735 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 ING4Q9UNL4 249 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 U3KQA8 63 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 CHD8Q9HCK8 2581 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 HMX3A6NHT5 357 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 CSO75390 466 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 HSD17B1P14061 328 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 DRD5P21918 477 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 CLDN8P56748 225 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 BLOC1S3Q6QNY0 202 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 RAB11FIP2Q7L804 512 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 ASB15Q8WXK1 588 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 SLC9A6Q92581 669 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 TM4SF18Q96CE8 201 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 LOXL4Q96JB6 756 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 MGLLQ99685 303 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 IKZF5Q9H5V7 419 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 PRDM7Q9NQW5 492 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 SLC6A13Q9NSD5 602 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 MS4A12Q9NXJ0 267 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 DNAJC27Q9NZQ0 273 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 SPTA1P02549 2419 aa8.08□□□□□ -1.12
LIMCH1-209ENST00000509277 BBIP1A8MTZ0 92 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 TOR1AO14656 332 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 CASKO14936 926 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 DSCR3O14972 297 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 SCAMP2O15127 329 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 GFRA3O60609 400 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 HSD3B1P14060 373 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 HSD3B2P26439 372 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 CDH12P55289 794 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 GPR85P60893 370 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 LGALS3BPQ08380 585 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 OR9A2Q8NGT5 310 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 XAGE5Q8WWM1 108 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 LHX9Q9NQ69 397 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 KLHL1Q9NR64 748 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 ZCCHC3Q9NUD5 404 aaKnown RBP8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms