RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 BCAP29Q9UHQ4 241 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 CES1P1Q9UKY3 287 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 PPIEQ9UNP9 301 aaKnown RBP4.16□□□□□ -1.74
NUP54-206ENST00000508465 DLGAP4Q9Y2H0 992 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 PLLPQ9Y342 182 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 FIS1Q9Y3D6 152 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 DOPEY2Q9Y3R5 2298 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 ZGRF1Q86YA3 2104 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 USP9YO00507 2555 aaPredicted RBP4.15□□□□□ -1.74
NUP54-206ENST00000508465 MYO7BQ6PIF6 2116 aa4.15□□□□□ -1.74
NUP54-206ENST00000508465 LRRK2Q5S007 2527 aa4.15□□□□□ -1.74
NUP54-206ENST00000508465 C2orf92A0A1B0GVN3 265 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 GNG14A0A1W2PPG7 69 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 A8MVJ9 347 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 TMEM233B4DJY2 109 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 CCL21O00585 134 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 HS6ST1O60243 411 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 PCDH7O60245 1069 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 GLRA3O75311 464 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 SEC22BO75396 215 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 SEMA3DO95025 777 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 NADKO95544 446 aaPredicted RBP4.15□□□□□ -1.75
NUP54-206ENST00000508465 CLDN1O95832 211 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 LDLRP01130 860 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 IGKV3-11P04433 115 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 ENO1P06733 434 aaKnown RBP4.15□□□□□ -1.75
NUP54-206ENST00000508465 CHRNGP07510 517 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 IL3P08700 152 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 ANXA4P09525 319 aaPredicted RBP4.15□□□□□ -1.75
NUP54-206ENST00000508465 NPSP0C0P6 89 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 CCL3P10147 92 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 GP1BBP13224 206 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 CPMP14384 443 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 CSNK2A2P19784 350 aaPredicted RBP4.15□□□□□ -1.75
NUP54-206ENST00000508465 EFNA1P20827 205 aaPredicted RBP4.15□□□□□ -1.75
NUP54-206ENST00000508465 S1PR1P21453 382 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 CNR1P21554 472 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 KCNJ5P48544 419 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 DNASE1L1P49184 302 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 SLC37A1P57057 533 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 FBXW4P57775 412 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 PPIAP62937 165 aaKnown RBP4.15□□□□□ -1.75
NUP54-206ENST00000508465 PLIN5Q00G26 463 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 PLGLB1Q02325 96 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 ACSM2AQ08AH3 577 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 PCLAFQ15004 111 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 NNATQ16517 81 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 C3AR1Q16581 482 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 IMPG1Q17R60 797 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 ZNF791Q3KP31 576 aaPredicted RBP4.15□□□□□ -1.75
NUP54-206ENST00000508465 KRT71Q3SY84 523 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 CCDC153Q494R4 210 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 GGTA1PQ4G0N0 100 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 TRMT12Q53H54 448 aaKnown RBP4.15□□□□□ -1.75
NUP54-206ENST00000508465 ARL13AQ5H913 290 aaPredicted RBP4.15□□□□□ -1.75
NUP54-206ENST00000508465 LIPMQ5VYY2 423 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 CES4AQ5XG92 561 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 ACSM2BQ68CK6 577 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 OR52E8Q6IFG1 317 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 ANKRD26P1Q6NSI1 321 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 SLC48A1Q6P1K1 146 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 WDR93Q6P2C0 686 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 ZCCHC23Q6ZST2 131 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 TRABD2AQ86V40 505 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 NUDT13Q86X67 352 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 SIAH3Q8IW03 269 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 ST13P4Q8IZP2 240 aaPredicted RBP4.15□□□□□ -1.75
NUP54-206ENST00000508465 GALNT4Q8N4A0 578 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 ZNF615Q8N8J6 731 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 TMEM178AQ8NBL3 297 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 OR2M7Q8NG81 312 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 OR10G3Q8NGC4 313 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 OR5L2Q8NGL0 311 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 OR5M9Q8NGP3 310 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 C16orf52Q8NHV5 167 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 AGR3Q8TD06 166 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 TCP10LQ8TDR4 215 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP4.15□□□□□ -1.75
NUP54-206ENST00000508465 EXOSC8Q96B26 276 aaKnown RBP4.15□□□□□ -1.75
NUP54-206ENST00000508465 KLHL29Q96CT2 875 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 CCDC126Q96EE4 140 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 CNRIP1Q96F85 164 aaPredicted RBP4.15□□□□□ -1.75
NUP54-206ENST00000508465 MAGED4Q96JG8 741 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 EGLN2Q96KS0 407 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 ZNF681Q96N22 645 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 GAL3ST4Q96RP7 486 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 WWTR1Q9GZV5 400 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 IQCGQ9H095 443 aaKnown RBP4.15□□□□□ -1.75
NUP54-206ENST00000508465 TUBB1Q9H4B7 451 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 TRIM45Q9H8W5 580 aaPredicted RBP4.15□□□□□ -1.75
NUP54-206ENST00000508465 BRF2Q9HAW0 419 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 KCNK9Q9NPC2 374 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 PFDN4Q9NQP4 134 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 NMRK1Q9NWW6 199 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 HPF1Q9NWY4 346 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 COPS7AQ9UBW8 275 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 PLEKHB1Q9UF11 243 aaPredicted RBP4.15□□□□□ -1.75
NUP54-206ENST00000508465 GIMAP2Q9UG22 337 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 BAIAP2L1Q9UHR4 511 aa4.15□□□□□ -1.75
NUP54-206ENST00000508465 LGALS13Q9UHV8 139 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms