RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 ZP1P60852 638 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 STXBP1P61764 594 aaKnown RBP3.53□□□□□ -1.84
USP54-217ENST00000498213 CDKL1Q00532 357 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 ALKBH1Q13686 389 aaKnown RBP3.53□□□□□ -1.84
USP54-217ENST00000498213 FRG1Q14331 258 aaKnown RBP3.53□□□□□ -1.84
USP54-217ENST00000498213 OASLQ15646 514 aaKnown RBP3.53□□□□□ -1.84
USP54-217ENST00000498213 ACKR1Q16570 336 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 GXYLT1Q4G148 440 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 SFT2D3Q587I9 215 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 NHSL2Q5HYW2 709 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 C1QTNF12Q5T7M4 302 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 WLSQ5T9L3 541 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 DUPD1Q68J44 220 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 SPINK14Q6IE38 97 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 FRMPD2BQ6IN97 320 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 TMEM81Q6P7N7 255 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 RAD9BQ6WBX8 426 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 RTL4Q6ZR62 310 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 C18orf65Q6ZTR6 163 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 PEX26Q7Z412 305 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 C17orf64Q86WR6 236 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 CRLF3Q8IUI8 442 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 TCAIMQ8N3R3 496 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 C17orf47Q8NEP4 570 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 OR14A16Q8NHC5 309 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 FAM110DQ8TAY7 271 aaPredicted RBP3.53□□□□□ -1.84
USP54-217ENST00000498213 SLC13A3Q8WWT9 602 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 RNASE6Q93091 150 aaKnown RBP3.53□□□□□ -1.84
USP54-217ENST00000498213 UCN3Q969E3 161 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 TRIM44Q96DX7 344 aaPredicted RBP3.53□□□□□ -1.84
USP54-217ENST00000498213 HES6Q96HZ4 224 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 DACH2Q96NX9 599 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 NAP1L3Q99457 506 aaPredicted RBP3.53□□□□□ -1.84
USP54-217ENST00000498213 FAM173AQ9BQD7 235 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 AIF1LQ9BQI0 150 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 FAM167BQ9BTA0 163 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 DEFB126Q9BYW3 111 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 SHCBP1LQ9BZQ2 653 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 ESRP2Q9H6T0 727 aaKnown RBP3.53□□□□□ -1.84
USP54-217ENST00000498213 PELI2Q9HAT8 420 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 PARVBQ9HBI1 364 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 ADAP2Q9NPF8 381 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 FANCFQ9NPI8 374 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 MS4A12Q9NXJ0 267 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 TAS2R13Q9NYV9 303 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 NDUFAF4Q9P032 175 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 HCN3Q9P1Z3 774 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 TAC3Q9UHF0 121 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 PCYOX1Q9UHG3 505 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 BOKQ9UMX3 212 aaPredicted RBP3.53□□□□□ -1.84
USP54-217ENST00000498213 C19orf53Q9UNZ5 99 aaPredicted RBP3.53□□□□□ -1.84
USP54-217ENST00000498213 DHRS7Q9Y394 339 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 PCDHGB1Q9Y5G3 927 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 KCNE2Q9Y6J6 123 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 PRSS21Q9Y6M0 314 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 MAU2Q9Y6X3 613 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 SPACA6W5XKT8 324 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 NOTCH3Q9UM47 2321 aa3.53□□□□□ -1.84
USP54-217ENST00000498213 RYR2Q92736 4967 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 A0A087WV62 115 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 FEZF1A0PJY2 475 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 FAM90A18PA6NE21 464 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 FAM90A16PA6NEW6 464 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 SDR42E2A6NKP2 422 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 OR6C76A6NM76 312 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 FAM90A9PA6NNJ1 464 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 A8MUI8 341 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 ARHGEF33A8MVX0 844 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 FAM90A5PA8MXJ8 464 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 KDM4EB2RXH2 506 aaPredicted RBP3.52□□□□□ -1.85
USP54-217ENST00000498213 NPIPA2E9PIF3 369 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 NPIPA3F8WFD2 350 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 UBFD1O14562 309 aaKnown RBP3.52□□□□□ -1.85
USP54-217ENST00000498213 ZNF500O60304 480 aaPredicted RBP3.52□□□□□ -1.85
USP54-217ENST00000498213 OR1I1O60431 355 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 FAM90A15PP0C7V4 464 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 FAM90A14PP0C7W9 464 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 COX7A2P14406 83 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 PAX1P15863 534 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 NAGAP17050 411 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 PRPH2P23942 346 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 MCM3P25205 808 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 OPRM1P35372 400 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 RFC3P40938 356 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 RPL21P46778 160 aaKnown RBP3.52□□□□□ -1.85
USP54-217ENST00000498213 TMED10P49755 219 aaKnown RBP3.52□□□□□ -1.85
USP54-217ENST00000498213 ASCL1P50553 236 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 EFNA3P52797 238 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 NAP1L1P55209 391 aaKnown RBP3.52□□□□□ -1.85
USP54-217ENST00000498213 CRYZQ08257 329 aaKnown RBP3.52□□□□□ -1.85
USP54-217ENST00000498213 PTPRCAPQ14761 206 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 SLC10A1Q14973 349 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 PFKFB4Q16877 469 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 IZUMO4Q1ZYL8 232 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 HKDC1Q2TB90 917 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 KLHL38Q2WGJ6 581 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 CMPK2Q5EBM0 449 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 VAX1Q5SQQ9 334 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 SEL1L2Q5TEA6 688 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 METTL2BQ6P1Q9 378 aaKnown RBP3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms