RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728		A0A087WZY1	265 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728		A0A1W2PQD3	144 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	TMEM114	B3SHH9	223 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	ADAMDEC1	O15204	470 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	NTN1	O95631	604 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	C1QC	P02747	245 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	G6PD	P11413	515 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	FCGR2A	P12318	317 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	SFTPD	P35247	375 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	PCYT1A	P49585	367 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	RPS3A	P61247	264 aa	Known RBP	10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	HBA1	P69905	142 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	OCRL	Q01968	901 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	ZNF844	Q08AG5	666 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	SGCB	Q16585	318 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	DCST2	Q5T1A1	773 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	ZCCHC12	Q6PEW1	402 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	LRIG3	Q6UXM1	1119 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	R3HCC1L	Q7Z5L2	792 aa	Known RBP	10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	CLECL1	Q8IZS7	167 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	ZNF781	Q8N8C0	355 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	FNDC5	Q8NAU1	212 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	OR2V1	Q8NHB1	315 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	B4GALNT2	Q8NHY0	566 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	ACTRT2	Q8TDY3	377 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	ABHD3	Q8WU67	409 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	ZBTB8A	Q96BR9	441 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	COQ8B	Q96D53	544 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	CHMP6	Q96FZ7	201 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	PPP1R36	Q96LQ0	422 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	STAC	Q99469	402 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	KLHL4	Q9C0H6	718 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	PIGU	Q9H490	435 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	COQ10B	Q9H8M1	238 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	UBTD1	Q9HAC8	227 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	NDRG3	Q9UGV2	375 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	KCNE5	Q9UJ90	142 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	ICAM5	Q9UMF0	924 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	CARD8	Q9Y2G2	431 aa		10.41	□□□□□ -0.74
VTI1A-208	ENST00000494728	C16orf97	H3BN30	126 aa		10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	SCD	O00767	359 aa		10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	AGTR1	P30556	359 aa		10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	KCNJ5	P48544	419 aa		10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	SERPINB4	P48594	390 aa		10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	CCT3	P49368	545 aa	Known RBP	10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	ZNF41	P51814	821 aa	Predicted RBP	10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	RAC1	P63000	192 aa		10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	EEF1A1	P68104	462 aa	Known RBP	10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	IFFO1	Q0D2I5	559 aa		10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	PDCD2	Q16342	344 aa	Predicted RBP	10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	ZNF239	Q16600	458 aa	Known RBP	10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	KLHL26	Q53HC5	615 aa		10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	CPTP	Q5TA50	214 aa		10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	EEF1A1P5	Q5VTE0	462 aa		10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	STAC2	Q6ZMT1	411 aa		10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728		Q71RC1	249 aa	Predicted RBP	10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	WDR75	Q8IWA0	830 aa	Known RBP	10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	OR56A1	Q8NGH5	318 aa		10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	OR6K3	Q8NGY3	331 aa		10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	PPP1R14C	Q8TAE6	165 aa		10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	PHOSPHO1	Q8TCT1	267 aa		10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	SFXN5	Q8TD22	340 aa		10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	ROBO4	Q8WZ75	1007 aa		10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	OR5P2	Q8WZ92	322 aa		10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	CAVIN3	Q969G5	261 aa		10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	GMPPA	Q96IJ6	420 aa	Predicted RBP	10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	KLHL15	Q96M94	604 aa		10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	OR7D2	Q96RA2	312 aa		10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	ACTRT3	Q9BYD9	372 aa		10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	EML4	Q9HC35	981 aa	Known RBP	10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	NEUROD4	Q9HD90	331 aa		10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	ELOVL5	Q9NYP7	299 aa		10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	EIF3L	Q9Y262	564 aa	Known RBP	10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	MXRA5	Q9NR99	2828 aa		10.4	□□□□□ -0.74
VTI1A-208	ENST00000494728	CR1	P17927	2039 aa		10.4	□□□□□ -0.75
VTI1A-208	ENST00000494728	MBD3L2B	A0A1B0GVZ6	204 aa	Predicted RBP	10.39	□□□□□ -0.75
VTI1A-208	ENST00000494728	WDR91	A4D1P6	747 aa		10.39	□□□□□ -0.75
VTI1A-208	ENST00000494728	ESPN	B1AK53	854 aa		10.39	□□□□□ -0.75
VTI1A-208	ENST00000494728	CASK	O14936	926 aa		10.39	□□□□□ -0.75
VTI1A-208	ENST00000494728	KLF4	O43474	513 aa		10.39	□□□□□ -0.75
VTI1A-208	ENST00000494728	BCAS1	O75363	584 aa	Predicted RBP	10.39	□□□□□ -0.75
VTI1A-208	ENST00000494728	PLAU	P00749	431 aa		10.39	□□□□□ -0.75
VTI1A-208	ENST00000494728	PRKCA	P17252	672 aa		10.39	□□□□□ -0.75
VTI1A-208	ENST00000494728	EDNRA	P25101	427 aa		10.39	□□□□□ -0.75
VTI1A-208	ENST00000494728	MAPK1	P28482	360 aa		10.39	□□□□□ -0.75
VTI1A-208	ENST00000494728	LCN1	P31025	176 aa		10.39	□□□□□ -0.75
VTI1A-208	ENST00000494728	SOAT1	P35610	550 aa		10.39	□□□□□ -0.75
VTI1A-208	ENST00000494728	SERPINB5	P36952	375 aa		10.39	□□□□□ -0.75
VTI1A-208	ENST00000494728	CASP9	P55211	416 aa		10.39	□□□□□ -0.75
VTI1A-208	ENST00000494728	C21orf58	P58505	322 aa		10.39	□□□□□ -0.75
VTI1A-208	ENST00000494728	PHC1	P78364	1004 aa		10.39	□□□□□ -0.75
VTI1A-208	ENST00000494728	PLAUR	Q03405	335 aa		10.39	□□□□□ -0.75
VTI1A-208	ENST00000494728	FUT5	Q11128	374 aa		10.39	□□□□□ -0.75
VTI1A-208	ENST00000494728	MPP2	Q14168	576 aa		10.39	□□□□□ -0.75
VTI1A-208	ENST00000494728	SPDYE7P	Q495Y7	208 aa		10.39	□□□□□ -0.75
VTI1A-208	ENST00000494728		Q5PR19	223 aa		10.39	□□□□□ -0.75
VTI1A-208	ENST00000494728	LCE2D	Q5TA82	110 aa	Predicted RBP	10.39	□□□□□ -0.75
VTI1A-208	ENST00000494728	HBM	Q6B0K9	141 aa		10.39	□□□□□ -0.75
VTI1A-208	ENST00000494728	OR4F3	Q6IEY1	312 aa		10.39	□□□□□ -0.75
VTI1A-208	ENST00000494728	ESPNL	Q6ZVH7	1005 aa		10.39	□□□□□ -0.75

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