RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, human

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CUX1-208	ENST00000485792	LILRB4	Q8NHJ6	448 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	PPP1R14C	Q8TAE6	165 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	ZPLD1	Q8TCW7	415 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	EFHD2	Q96C19	240 aa	Predicted RBP	5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	NEURL3	Q96EH8	262 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	WDYHV1	Q96HA8	205 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	MAGEB18	Q96M61	343 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	SDF2	Q99470	211 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	PRPF18	Q99633	342 aa	Known RBP	5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	TTYH2	Q9BSA4	534 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	INPP5K	Q9BT40	448 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	BTBD2	Q9BX70	525 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	OSBPL11	Q9BXB4	747 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	ACTRT3	Q9BYD9	372 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	NMUR2	Q9GZQ4	415 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	ENKD1	Q9H0I2	346 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	TP63	Q9H3D4	680 aa	Predicted RBP	5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	IKZF5	Q9H5V7	419 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792		Q9N2J8	555 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	PNPLA3	Q9NST1	481 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	DDX18	Q9NVP1	670 aa	Known RBP	5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	ZIM2	Q9NZV7	527 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	JKAMP	Q9P055	326 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	SH3BGRL2	Q9UJC5	107 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	CHST2	Q9Y4C5	530 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	USH1C	Q9Y6N9	552 aa		5.18	□□□□□ -1.58
CUX1-208	ENST00000485792	CCDC168	Q8NDH2	2452 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	MBD3L4	A6NDZ8	208 aa	Predicted RBP	5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	MBD3L3	A6NE82	208 aa	Predicted RBP	5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	MBD3L5	A6NJ08	208 aa	Predicted RBP	5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	CD8B2	A6NJW9	211 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	DUXA	A6NLW8	204 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	PRRG2	O14669	202 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	ATP8B1	O43520	1251 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	HCRTR2	O43614	444 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	EDF1	O60869	148 aa	Known RBP	5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	PDE9A	O76083	593 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	UTS2	O95399	124 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	OXSR1	O95747	527 aa	Predicted RBP	5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	IL6	P05231	212 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	GLI4	P10075	376 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	GABRA1	P14867	456 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	ZNF708	P17019	499 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	BMP7	P18075	431 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	UQCRC2	P22695	453 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	ACVR2A	P27037	513 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	SHC1	P29353	583 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	PCYT1A	P49585	367 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	PRIM2	P49643	509 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	DGKQ	P52824	942 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	PSMD4	P55036	377 aa	Known RBP	5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	DSCR4	P56555	118 aa	Predicted RBP	5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	NME5	P56597	212 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	CLDN18	P56856	261 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	TXNL4A	P83876	142 aa	Known RBP	5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	C17orf67	Q0P5P2	114 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	RCAN2	Q14206	197 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	GANAB	Q14697	944 aa	Known RBP	5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	LASP1	Q14847	261 aa	Known RBP	5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	GUSBP1	Q15486	140 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	ZNHIT3	Q15649	155 aa	Predicted RBP	5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	ZNF141	Q15928	474 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	GRAMD1B	Q3KR37	738 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	ARHGAP11B	Q3KRB8	267 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	FAM174B	Q3ZCQ3	159 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	FBXL19-AS1	Q494R0	122 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	EIPR1	Q53HC9	387 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	SLC25A53	Q5H9E4	307 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	NKAPL	Q5M9Q1	402 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	LRIF1	Q5T3J3	769 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	ANXA8L1	Q5VT79	327 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	NSUN5P2	Q63ZY6	315 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	TMEM211	Q6ICI0	200 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	ANGPTL8	Q6UXH0	198 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	C6orf120	Q7Z4R8	191 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	MTERF4	Q7Z6M4	381 aa	Known RBP	5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	MRGPRG	Q86SM5	289 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	ANKRD46	Q86W74	232 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	ULK2	Q8IYT8	1036 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	RELL2	Q8NC24	303 aa	Predicted RBP	5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	OR5D16	Q8NGK9	328 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	RFWD2	Q8NHY2	731 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	MBD3L2	Q8NHZ7	208 aa	Predicted RBP	5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	POC1B	Q8TC44	478 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	ZFP90	Q8TF47	636 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	GTF2H4	Q92759	462 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	PMM1	Q92871	262 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	SARAF	Q96BY9	339 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	C1GALT1C1	Q96EU7	318 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	YIPF4	Q9BSR8	244 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	CCDC28B	Q9BUN5	200 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	UGT2B28	Q9BY64	529 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	TRIM8	Q9BZR9	551 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	DPY30	Q9C005	99 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	ZNF350	Q9GZX5	532 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	METTL7A	Q9H8H3	244 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	CALHM2	Q9HA72	323 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	HHATL	Q9HCP6	504 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	EQTN	Q9NQ60	294 aa		5.17	□□□□□ -1.58
CUX1-208	ENST00000485792	POLE3	Q9NRF9	147 aa		5.17	□□□□□ -1.58

Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms