RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 SLC22A10Q63ZE4 541 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 ISLR2Q6UXK2 745 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 VASH2Q86V25 355 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 PRR22Q8IZ63 422 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 LILRA2Q8N149 483 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 OR5W2Q8NH69 310 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 OR5K1Q8NHB7 308 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 GRHL3Q8TE85 626 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 EME1Q96AY2 570 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 NTNG2Q96CW9 530 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 ARSGQ96EG1 525 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 MPP4Q96JB8 637 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 HS6ST2Q96MM7 605 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 RDH12Q96NR8 316 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 MCHR1Q99705 422 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 UTP23Q9BRU9 249 aaKnown RBP9.31□□□□□ -0.92
USP39-215ENST00000481409 FNDC11Q9BVV2 318 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 OSBPL11Q9BXB4 747 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 ANGPTL4Q9BY76 406 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 METTL7AQ9H8H3 244 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 KRCC1Q9NPI7 259 aaPredicted RBP9.31□□□□□ -0.92
USP39-215ENST00000481409 SELENONQ9NZV5 590 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 NKX1-2Q9UD57 310 aaPredicted RBP9.31□□□□□ -0.92
USP39-215ENST00000481409 ENOPH1Q9UHY7 261 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 TMCC3Q9ULS5 477 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 PCDHGB7Q9Y5F8 929 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 CHCHD2Q9Y6H1 151 aaPredicted RBP9.31□□□□□ -0.92
USP39-215ENST00000481409 NPIPA5A0A0B4J1W7 369 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 TRAPPC13A5PLN9 417 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 TMEM8BA6NDV4 472 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 NPIPA7E9PJI5 369 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 G3V2T6 193 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 M0R3H8 397 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 TNFRSF11BO00300 401 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 NKX2-8O15522 239 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 EFSO43281 561 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 TLX3O43711 291 aaPredicted RBP9.3□□□□□ -0.92
USP39-215ENST00000481409 E2F6O75461 281 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 OR6B1O95007 311 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 GADD45GO95257 159 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 HPRP00739 348 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 IGF2P01344 180 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 P04436 131 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 CELA2AP08217 269 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 LINGO3P0C6S8 592 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 NPIPA8P0DM63 369 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 ANXA8P13928 327 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 ELAVL4P26378 380 aaKnown RBP9.3□□□□□ -0.92
USP39-215ENST00000481409 FKBP2P26885 142 aaKnown RBP9.3□□□□□ -0.92
USP39-215ENST00000481409 RRM2P31350 389 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 IFNGR2P38484 337 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 RBM34P42696 430 aaKnown RBP9.3□□□□□ -0.92
USP39-215ENST00000481409 ACAA2P42765 397 aaKnown RBP9.3□□□□□ -0.92
USP39-215ENST00000481409 HTR3AP46098 478 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 LIMS1P48059 325 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 PTDSS1P48651 473 aaKnown RBP9.3□□□□□ -0.92
USP39-215ENST00000481409 HSPA13P48723 471 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 GAS1P54826 345 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 DLX5P56178 289 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 TAS2R41P59536 307 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 SPIBQ01892 262 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 MFAP5Q13361 173 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 GANABQ14697 944 aaKnown RBP9.3□□□□□ -0.92
USP39-215ENST00000481409 TRAM2Q15035 370 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 TRIP10Q15642 601 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 RFX4Q33E94 735 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 ENTPD8Q5MY95 495 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 WBP2NLQ6ICG8 309 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 HMBOX1Q6NT76 420 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 PPP4R4Q6NUP7 873 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 ULK3Q6PHR2 472 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 IGFL2Q6UWQ7 119 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 IL20RBQ6UXL0 311 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 DEF8Q6ZN54 512 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 CCDC81Q6ZN84 652 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 LRRC69Q6ZNQ3 347 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 PLEKHM3Q6ZWE6 761 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 OLIG3Q7RTU3 272 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 TSEN54Q7Z6J9 526 aaKnown RBP9.3□□□□□ -0.92
USP39-215ENST00000481409 RNF113BQ8IZP6 322 aaKnown RBP9.3□□□□□ -0.92
USP39-215ENST00000481409 CYP4Z2PQ8N1L4 340 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 OR10Q1Q8NGQ4 319 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 B4GALNT2Q8NHY0 566 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 VANGL1Q8TAA9 524 aaPredicted RBP9.3□□□□□ -0.92
USP39-215ENST00000481409 TMEM234Q8WY98 164 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 TM9SF4Q92544 642 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 CNOT9Q92600 299 aaKnown RBP9.3□□□□□ -0.92
USP39-215ENST00000481409 HAS2Q92819 552 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 GATA6Q92908 595 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 SLC38A4Q969I6 547 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 TMEM41AQ96HV5 264 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 NODALQ96S42 347 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 RBM4BQ9BQ04 359 aaKnown RBP9.3□□□□□ -0.92
USP39-215ENST00000481409 RBM4Q9BWF3 364 aaKnown RBP9.3□□□□□ -0.92
USP39-215ENST00000481409 RSPO3Q9BXY4 272 aaPredicted RBP9.3□□□□□ -0.92
USP39-215ENST00000481409 KLHL4Q9C0H6 718 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 GABARAPL1Q9H0R8 117 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 PTGES2Q9H7Z7 377 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 LIN28AQ9H9Z2 209 aaKnown RBP9.3□□□□□ -0.92
USP39-215ENST00000481409 NMNAT1Q9HAN9 279 aaPredicted RBP9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms