RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 PLPP2O43688 288 aa6.94□□□□□ -1.3
USP54-211ENST00000474929 FAM58BPP0C7Q3 252 aa6.94□□□□□ -1.3
USP54-211ENST00000474929 MYZAPP0CAP1 466 aa6.94□□□□□ -1.3
USP54-211ENST00000474929 NPR2P20594 1047 aa6.94□□□□□ -1.3
USP54-211ENST00000474929 S1PR1P21453 382 aa6.94□□□□□ -1.3
USP54-211ENST00000474929 FEN1P39748 380 aaKnown RBP6.94□□□□□ -1.3
USP54-211ENST00000474929 XKP51811 444 aa6.94□□□□□ -1.3
USP54-211ENST00000474929 SARNPP82979 210 aaKnown RBP6.94□□□□□ -1.3
USP54-211ENST00000474929 PRICKLE4Q2TBC4 344 aa6.94□□□□□ -1.3
USP54-211ENST00000474929 MRM1Q6IN84 353 aaKnown RBP6.94□□□□□ -1.3
USP54-211ENST00000474929 MED27Q6P2C8 311 aa6.94□□□□□ -1.3
USP54-211ENST00000474929 C9orf139Q6ZV77 190 aa6.94□□□□□ -1.3
USP54-211ENST00000474929 DENND6AQ8IWF6 608 aa6.94□□□□□ -1.3
USP54-211ENST00000474929 OR52R1Q8NGF1 315 aa6.94□□□□□ -1.3
USP54-211ENST00000474929 ACTRT2Q8TDY3 377 aa6.94□□□□□ -1.3
USP54-211ENST00000474929 APH1AQ96BI3 265 aa6.94□□□□□ -1.3
USP54-211ENST00000474929 PDLIM5Q96HC4 596 aaKnown RBP6.94□□□□□ -1.3
USP54-211ENST00000474929 ZNF717Q9BY31 904 aaPredicted RBP6.94□□□□□ -1.3
USP54-211ENST00000474929 TBL1XR1Q9BZK7 514 aa6.94□□□□□ -1.3
USP54-211ENST00000474929 SLC17A5Q9NRA2 495 aa6.94□□□□□ -1.3
USP54-211ENST00000474929 MAT2BQ9NZL9 334 aa6.94□□□□□ -1.3
USP54-211ENST00000474929 ZNF69Q9UC07 566 aa6.94□□□□□ -1.3
USP54-211ENST00000474929 OPN4Q9UHM6 478 aa6.94□□□□□ -1.3
USP54-211ENST00000474929 ZNF639Q9UID6 485 aa6.94□□□□□ -1.3
USP54-211ENST00000474929 UTS2RQ9UKP6 389 aa6.94□□□□□ -1.3
USP54-211ENST00000474929 ZNF490Q9ULM2 529 aaPredicted RBP6.94□□□□□ -1.3
USP54-211ENST00000474929 OARD1Q9Y530 152 aa6.94□□□□□ -1.3
USP54-211ENST00000474929 ASB4Q9Y574 426 aa6.94□□□□□ -1.3
USP54-211ENST00000474929 DYNC2H1Q8NCM8 4307 aaKnown RBP6.93□□□□□ -1.3
USP54-211ENST00000474929 A0A0A6YYD5 115 aa6.93□□□□□ -1.3
USP54-211ENST00000474929 CCDC151A5D8V7 595 aa6.93□□□□□ -1.3
USP54-211ENST00000474929 FAM181BA6NEQ2 426 aa6.93□□□□□ -1.3
USP54-211ENST00000474929 CXorf49A8MYA2 514 aaPredicted RBP6.93□□□□□ -1.3
USP54-211ENST00000474929 M0R233 179 aa6.93□□□□□ -1.3
USP54-211ENST00000474929 PLPP1O14494 284 aa6.93□□□□□ -1.3
USP54-211ENST00000474929 FADS1O60427 444 aa6.93□□□□□ -1.3
USP54-211ENST00000474929 GUCY1B2O75343 617 aa6.93□□□□□ -1.3
USP54-211ENST00000474929 TGFB1P01137 390 aa6.93□□□□□ -1.3
USP54-211ENST00000474929 GP5P40197 560 aa6.93□□□□□ -1.3
USP54-211ENST00000474929 PIK3CBP42338 1070 aa6.93□□□□□ -1.3
USP54-211ENST00000474929 EMDP50402 254 aa6.93□□□□□ -1.3
USP54-211ENST00000474929 MANFP55145 182 aaKnown RBP6.93□□□□□ -1.3
USP54-211ENST00000474929 POU4F1Q01851 419 aa6.93□□□□□ -1.3
USP54-211ENST00000474929 IRF8Q02556 426 aa6.93□□□□□ -1.3
USP54-211ENST00000474929 EXOSC7Q15024 291 aaKnown RBP6.93□□□□□ -1.3
USP54-211ENST00000474929 GABRA6Q16445 453 aa6.93□□□□□ -1.3
USP54-211ENST00000474929 PDK4Q16654 411 aa6.93□□□□□ -1.3
USP54-211ENST00000474929 C3orf36Q3SXR2 165 aa6.93□□□□□ -1.3
USP54-211ENST00000474929 CPTPQ5TA50 214 aa6.93□□□□□ -1.3
USP54-211ENST00000474929 CCBE1Q6UXH8 406 aaPredicted RBP6.93□□□□□ -1.3
USP54-211ENST00000474929 LAS2Q8IYD9 372 aa6.93□□□□□ -1.3
USP54-211ENST00000474929 LILRA2Q8N149 483 aa6.93□□□□□ -1.3
USP54-211ENST00000474929 TMEM86BQ8N661 226 aa6.93□□□□□ -1.3
USP54-211ENST00000474929 CKAP2Q8WWK9 683 aa6.93□□□□□ -1.3
USP54-211ENST00000474929 ZNF669Q96BR6 464 aaPredicted RBP6.93□□□□□ -1.3
USP54-211ENST00000474929 EFHD2Q96C19 240 aaPredicted RBP6.93□□□□□ -1.3
USP54-211ENST00000474929 RNF145Q96MT1 663 aa6.93□□□□□ -1.3
USP54-211ENST00000474929 SLC38A2Q96QD8 506 aa6.93□□□□□ -1.3
USP54-211ENST00000474929 MRI1Q9BV20 369 aa6.93□□□□□ -1.3
USP54-211ENST00000474929 DDX31Q9H8H2 851 aaKnown RBP6.93□□□□□ -1.3
USP54-211ENST00000474929 PSME2Q9UL46 239 aa6.93□□□□□ -1.3
USP54-211ENST00000474929 HERC2O95714 4834 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 RYR1P21817 5038 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 A0A1W2PR48 441 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 A0A1W2PR80 420 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 GPR171O14626 319 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 CYTIPO60759 359 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 EEDO75530 441 aaKnown RBP6.92□□□□□ -1.3
USP54-211ENST00000474929 GSNP06396 782 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 CT45A8P0DMV1 189 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 CT45A9P0DMV2 189 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 PCNAP12004 261 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 CSNK2A2P19784 350 aaPredicted RBP6.92□□□□□ -1.3
USP54-211ENST00000474929 SLC7A1P30825 629 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 EVX1P49640 407 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 VPS41P49754 854 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 PROK1P58294 105 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 RAC3P60763 192 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 BASP1P80723 227 aaKnown RBP6.92□□□□□ -1.3
USP54-211ENST00000474929 E2F2Q14209 437 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 DECR1Q16698 335 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 PLPPR5Q32ZL2 321 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 CT45A2Q5DJT8 189 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 ELFN2Q5R3F8 820 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 SPATA21Q7Z572 469 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 MISPQ8IVT2 679 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 GSPT2Q8IYD1 628 aaKnown RBP6.92□□□□□ -1.3
USP54-211ENST00000474929 ZNF675Q8TD23 568 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 ZFP90Q8TF47 636 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 DUSP19Q8WTR2 217 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 ARL8AQ96BM9 186 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 SLC47A1Q96FL8 570 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 CCDC42Q96M95 316 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 VSTM2LQ96N03 204 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 ZNF317Q96PQ6 595 aaPredicted RBP6.92□□□□□ -1.3
USP54-211ENST00000474929 DNAJC7Q99615 494 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 DOK1Q99704 481 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 B9D2Q9BPU9 175 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 C1QTNF6Q9BXI9 259 aa6.92□□□□□ -1.3
USP54-211ENST00000474929 SRXN1Q9BYN0 137 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms