RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 RAB21Q9UL25 225 aa14.12□□□□□ -0.15
CCDC88B-205ENST00000472524 EDARQ9UNE0 448 aa14.12□□□□□ -0.15
CCDC88B-205ENST00000472524 RAP2CQ9Y3L5 183 aa14.12□□□□□ -0.15
CCDC88B-205ENST00000472524 ACANP16112 2415 aa14.12□□□□□ -0.15
CCDC88B-205ENST00000472524 TNFSF11O14788 317 aa14.11□□□□□ -0.15
CCDC88B-205ENST00000472524 AQP8O94778 261 aa14.11□□□□□ -0.15
CCDC88B-205ENST00000472524 NUDT14O95848 222 aa14.11□□□□□ -0.15
CCDC88B-205ENST00000472524 RAF1P04049 648 aa14.11□□□□□ -0.15
CCDC88B-205ENST00000472524 MYZAPP0CAP1 466 aa14.11□□□□□ -0.15
CCDC88B-205ENST00000472524 DHRS4L1P0CG22 281 aa14.11□□□□□ -0.15
CCDC88B-205ENST00000472524 FCGR2AP12318 317 aa14.11□□□□□ -0.15
CCDC88B-205ENST00000472524 SLC6A8P48029 635 aa14.11□□□□□ -0.15
CCDC88B-205ENST00000472524 KCNJ5P48544 419 aa14.11□□□□□ -0.15
CCDC88B-205ENST00000472524 RPS26P62854 115 aaKnown RBP14.11□□□□□ -0.15
CCDC88B-205ENST00000472524 ZNF117Q03924 483 aa14.11□□□□□ -0.15
CCDC88B-205ENST00000472524 DEFB113Q30KQ7 82 aa14.11□□□□□ -0.15
CCDC88B-205ENST00000472524 ZNF474Q6S9Z5 364 aaPredicted RBP14.11□□□□□ -0.15
CCDC88B-205ENST00000472524 CAMKMTQ7Z624 323 aa14.11□□□□□ -0.15
CCDC88B-205ENST00000472524 CLEC4FQ8N1N0 589 aa14.11□□□□□ -0.15
CCDC88B-205ENST00000472524 ZNF527Q8NB42 609 aa14.11□□□□□ -0.15
CCDC88B-205ENST00000472524 WFDC11Q8NEX6 87 aa14.11□□□□□ -0.15
CCDC88B-205ENST00000472524 OR10D3Q8NH80 312 aa14.11□□□□□ -0.15
CCDC88B-205ENST00000472524 POC1BQ8TC44 478 aa14.11□□□□□ -0.15
CCDC88B-205ENST00000472524 ACTRT2Q8TDY3 377 aa14.11□□□□□ -0.15
CCDC88B-205ENST00000472524 SORT1Q99523 831 aa14.11□□□□□ -0.15
CCDC88B-205ENST00000472524 PAIP2Q9BPZ3 127 aaKnown RBP14.11□□□□□ -0.15
CCDC88B-205ENST00000472524 PLEKHF2Q9H8W4 249 aa14.11□□□□□ -0.15
CCDC88B-205ENST00000472524 ASIC5Q9NY37 505 aa14.11□□□□□ -0.15
CCDC88B-205ENST00000472524 CLEC4AQ9UMR7 237 aa14.11□□□□□ -0.15
CCDC88B-205ENST00000472524 PROCRQ9UNN8 238 aa14.11□□□□□ -0.15
CCDC88B-205ENST00000472524 TESMINQ9Y4I5 508 aa14.11□□□□□ -0.15
CCDC88B-205ENST00000472524 RNF103-CHMP3A0A140T963 221 aa14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 C7orf72A4D263 438 aa14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 CASKO14936 926 aa14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 OIP5O43482 229 aa14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 CXCL13O43927 109 aa14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 HRGP04196 525 aa14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 POU2F1P14859 743 aa14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 ME2P23368 584 aa14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 CD79BP40259 229 aa14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 RPL14P50914 215 aaKnown RBP14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 C21orf58P58505 322 aa14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 RAC1P63000 192 aa14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 FOXF1Q12946 379 aa14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 KEAP1Q14145 624 aa14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 MPP2Q14168 576 aa14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 SMU1Q2TAY7 513 aa14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 NDUFAF6Q330K2 333 aa14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 MTERF4Q7Z6M4 381 aaKnown RBP14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 ANKRD42Q8N9B4 389 aa14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 OR4A15Q8NGL6 344 aa14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 OR2V1Q8NHB1 315 aa14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 SLC35G5Q96KT7 338 aa14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 SMR3AQ99954 134 aa14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 NUF2Q9BZD4 464 aa14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 DPY30Q9C005 99 aa14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 HOXD1Q9GZZ0 328 aa14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 KLHL28Q9NXS3 571 aa14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 MCTS1Q9ULC4 181 aaKnown RBP14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 CARD8Q9Y2G2 431 aa14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 DSCAMO60469 2012 aa14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 ARID1AO14497 2285 aa14.1□□□□□ -0.15
CCDC88B-205ENST00000472524 VPS13CQ709C8 3753 aa14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 H3BNH8 94 aa14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 GTPBP1O00178 669 aaKnown RBP14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 GOSR1O95249 250 aa14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 SYNGR4O95473 234 aa14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 PLGP00747 810 aaPredicted RBP14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 LINGO3P0C6S8 592 aa14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 FOSL1P15407 271 aa14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 IL11P20809 199 aa14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 MATN1P21941 496 aa14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 PSMA4P25789 261 aaKnown RBP14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 SFTPDP35247 375 aa14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 ATP12AP54707 1039 aa14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 OCRLQ01968 901 aa14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 STX3Q13277 289 aa14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 FGFBP1Q14512 234 aa14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 GUSBP1Q15486 140 aa14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 EXOC3L2Q2M3D2 409 aa14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 CTU2Q2VPK5 515 aaKnown RBP14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 HBMQ6B0K9 141 aa14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 BHLHB9Q6PI77 547 aa14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 CBLN3Q6UW01 205 aa14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 FAM214BQ7L5A3 538 aa14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 C6orf120Q7Z4R8 191 aa14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 ANKRD46Q86W74 232 aa14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 TMCO5AQ8N6Q1 288 aa14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 ZNF610Q8N9Z0 462 aa14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 RFWD2Q8NHY2 731 aa14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 ADGRG7Q96K78 797 aa14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 SERHL2Q9H4I8 314 aa14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 C6orf203Q9P0P8 240 aaPredicted RBP14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 EMC9Q9Y3B6 208 aa14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 ACTL7BQ9Y614 415 aa14.09□□□□□ -0.15
CCDC88B-205ENST00000472524 ROS1P08922 2347 aa14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 A0A0J9YW62 118 aa14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 A0A1W2PPR1 153 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms