RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 PHOSPHO1Q8TCT1 267 aa17.13■□□□□ 0.33
COL9A3-206ENST00000466532 PERPQ96FX8 193 aa17.13■□□□□ 0.33
COL9A3-206ENST00000466532 Q96MF0 132 aa17.13■□□□□ 0.33
COL9A3-206ENST00000466532 PIGUQ9H490 435 aa17.13■□□□□ 0.33
COL9A3-206ENST00000466532 FANCFQ9NPI8 374 aa17.13■□□□□ 0.33
COL9A3-206ENST00000466532 GIN1Q9NXP7 522 aa17.13■□□□□ 0.33
COL9A3-206ENST00000466532 SLC17A7Q9P2U7 560 aa17.13■□□□□ 0.33
COL9A3-206ENST00000466532 ROS1P08922 2347 aa17.13■□□□□ 0.33
COL9A3-206ENST00000466532 TUBBP07437 444 aa17.12■□□□□ 0.33
COL9A3-206ENST00000466532 LINGO3P0C6S8 592 aa17.12■□□□□ 0.33
COL9A3-206ENST00000466532 LAMP1P11279 417 aa17.12■□□□□ 0.33
COL9A3-206ENST00000466532 SFTPDP35247 375 aa17.12■□□□□ 0.33
COL9A3-206ENST00000466532 EIF1P41567 113 aaKnown RBP17.12■□□□□ 0.33
COL9A3-206ENST00000466532 ZNF117Q03924 483 aa17.12■□□□□ 0.33
COL9A3-206ENST00000466532 FOXF1Q12946 379 aa17.12■□□□□ 0.33
COL9A3-206ENST00000466532 PTGR1Q14914 329 aa17.12■□□□□ 0.33
COL9A3-206ENST00000466532 ATP6AP1LQ52LC2 224 aa17.12■□□□□ 0.33
COL9A3-206ENST00000466532 XKR7Q5GH72 579 aa17.12■□□□□ 0.33
COL9A3-206ENST00000466532 BEX5Q5H9J7 111 aa17.12■□□□□ 0.33
COL9A3-206ENST00000466532 CDC73Q6P1J9 531 aa17.12■□□□□ 0.33
COL9A3-206ENST00000466532 ZCCHC23Q6ZST2 131 aa17.12■□□□□ 0.33
COL9A3-206ENST00000466532 BEND4Q6ZU67 534 aa17.12■□□□□ 0.33
COL9A3-206ENST00000466532 MTERF4Q7Z6M4 381 aaKnown RBP17.12■□□□□ 0.33
COL9A3-206ENST00000466532 YTHDF3Q7Z739 585 aaKnown RBP17.12■□□□□ 0.33
COL9A3-206ENST00000466532 STK32CQ86UX6 486 aa17.12■□□□□ 0.33
COL9A3-206ENST00000466532 LILRA2Q8N149 483 aa17.12■□□□□ 0.33
COL9A3-206ENST00000466532 RIBC1Q8N443 379 aaPredicted RBP17.12■□□□□ 0.33
COL9A3-206ENST00000466532 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.12■□□□□ 0.33
COL9A3-206ENST00000466532 OSTF1Q92882 214 aa17.12■□□□□ 0.33
COL9A3-206ENST00000466532 KLHL15Q96M94 604 aa17.12■□□□□ 0.33
COL9A3-206ENST00000466532 C1orf50Q9BV19 199 aa17.12■□□□□ 0.33
COL9A3-206ENST00000466532 C12orf49Q9H741 205 aa17.12■□□□□ 0.33
COL9A3-206ENST00000466532 NPIPA5A0A0B4J1W7 369 aa17.11■□□□□ 0.33
COL9A3-206ENST00000466532 FAM171A2A8MVW0 826 aa17.11■□□□□ 0.33
COL9A3-206ENST00000466532 NPIPA7E9PJI5 369 aa17.11■□□□□ 0.33
COL9A3-206ENST00000466532 KLF4O43474 513 aa17.11■□□□□ 0.33
COL9A3-206ENST00000466532 SPAG7O75391 227 aa17.11■□□□□ 0.33
COL9A3-206ENST00000466532 SLU7O95391 586 aaKnown RBP17.11■□□□□ 0.33
COL9A3-206ENST00000466532 NUDT14O95848 222 aa17.11■□□□□ 0.33
COL9A3-206ENST00000466532 HEXAP06865 529 aa17.11■□□□□ 0.33
COL9A3-206ENST00000466532 NPIPA8P0DM63 369 aa17.11■□□□□ 0.33
COL9A3-206ENST00000466532 SHC1P29353 583 aa17.11■□□□□ 0.33
COL9A3-206ENST00000466532 AGTR1P30556 359 aa17.11■□□□□ 0.33
COL9A3-206ENST00000466532 CCT3P49368 545 aaKnown RBP17.11■□□□□ 0.33
COL9A3-206ENST00000466532 RNF144AP50876 292 aaPredicted RBP17.11■□□□□ 0.33
COL9A3-206ENST00000466532 CARD18P57730 90 aa17.11■□□□□ 0.33
COL9A3-206ENST00000466532 TP53BP2Q13625 1128 aa17.11■□□□□ 0.33
COL9A3-206ENST00000466532 GTF2IRD2BQ6EKJ0 949 aa17.11■□□□□ 0.33
COL9A3-206ENST00000466532 PRSS57Q6UWY2 283 aa17.11■□□□□ 0.33
COL9A3-206ENST00000466532 GTF2IRD2Q86UP8 949 aa17.11■□□□□ 0.33
COL9A3-206ENST00000466532 WFDC8Q8IUA0 241 aa17.11■□□□□ 0.33
COL9A3-206ENST00000466532 ZNF527Q8NB42 609 aa17.11■□□□□ 0.33
COL9A3-206ENST00000466532 PPP1R14CQ8TAE6 165 aa17.11■□□□□ 0.33
COL9A3-206ENST00000466532 ADAMTS15Q8TE58 950 aa17.11■□□□□ 0.33
COL9A3-206ENST00000466532 ROBO4Q8WZ75 1007 aa17.11■□□□□ 0.33
COL9A3-206ENST00000466532 OR5P2Q8WZ92 322 aa17.11■□□□□ 0.33
COL9A3-206ENST00000466532 COX4I2Q96KJ9 171 aa17.11■□□□□ 0.33
COL9A3-206ENST00000466532 ACTRT3Q9BYD9 372 aa17.11■□□□□ 0.33
COL9A3-206ENST00000466532 CXorf36Q9H7Y0 433 aa17.11■□□□□ 0.33
COL9A3-206ENST00000466532 ATAD3AQ9NVI7 634 aa17.11■□□□□ 0.33
COL9A3-206ENST00000466532 FAF1Q9UNN5 650 aaPredicted RBP17.11■□□□□ 0.33
COL9A3-206ENST00000466532 H7C1Q1 480 aa17.1■□□□□ 0.33
COL9A3-206ENST00000466532 OIP5O43482 229 aa17.1■□□□□ 0.33
COL9A3-206ENST00000466532 SKAP2O75563 359 aaPredicted RBP17.1■□□□□ 0.33
COL9A3-206ENST00000466532 C6orf47O95873 294 aa17.1■□□□□ 0.33
COL9A3-206ENST00000466532 ELK4P28324 431 aa17.1■□□□□ 0.33
COL9A3-206ENST00000466532 P2RX1P51575 399 aa17.1■□□□□ 0.33
COL9A3-206ENST00000466532 ZNF239Q16600 458 aaKnown RBP17.1■□□□□ 0.33
COL9A3-206ENST00000466532 LSM12Q3MHD2 195 aaKnown RBP17.1■□□□□ 0.33
COL9A3-206ENST00000466532 SPDYE7PQ495Y7 208 aa17.1■□□□□ 0.33
COL9A3-206ENST00000466532 C6orf136Q5SQH8 315 aa17.1■□□□□ 0.33
COL9A3-206ENST00000466532 DCST2Q5T1A1 773 aa17.1■□□□□ 0.33
COL9A3-206ENST00000466532 CBLN3Q6UW01 205 aa17.1■□□□□ 0.33
COL9A3-206ENST00000466532 ZNF704Q6ZNC4 412 aaPredicted RBP17.1■□□□□ 0.33
COL9A3-206ENST00000466532 PLEKHM3Q6ZWE6 761 aa17.1■□□□□ 0.33
COL9A3-206ENST00000466532 CIARTQ8N365 385 aaPredicted RBP17.1■□□□□ 0.33
COL9A3-206ENST00000466532 NATD1Q8N6N6 113 aa17.1■□□□□ 0.33
COL9A3-206ENST00000466532 FNDC5Q8NAU1 212 aa17.1■□□□□ 0.33
COL9A3-206ENST00000466532 OR56A1Q8NGH5 318 aa17.1■□□□□ 0.33
COL9A3-206ENST00000466532 FBXO27Q8NI29 283 aa17.1■□□□□ 0.33
COL9A3-206ENST00000466532 PSMA8Q8TAA3 256 aa17.1■□□□□ 0.33
COL9A3-206ENST00000466532 TCP10LQ8TDR4 215 aa17.1■□□□□ 0.33
COL9A3-206ENST00000466532 NUDT8Q8WV74 236 aa17.1■□□□□ 0.33
COL9A3-206ENST00000466532 REXO5Q96IC2 774 aaKnown RBP17.1■□□□□ 0.33
COL9A3-206ENST00000466532 C3orf30Q96M34 536 aa17.1■□□□□ 0.33
COL9A3-206ENST00000466532 ACTR6Q9GZN1 396 aa17.1■□□□□ 0.33
COL9A3-206ENST00000466532 HOXD1Q9GZZ0 328 aa17.1■□□□□ 0.33
COL9A3-206ENST00000466532 TIGARQ9NQ88 270 aa17.1■□□□□ 0.33
COL9A3-206ENST00000466532 CARD8Q9Y2G2 431 aa17.1■□□□□ 0.33
COL9A3-206ENST00000466532 GPR52Q9Y2T5 361 aa17.1■□□□□ 0.33
COL9A3-206ENST00000466532 H3BNH8 94 aa17.09■□□□□ 0.33
COL9A3-206ENST00000466532 LYPLA1O75608 230 aaPredicted RBP17.09■□□□□ 0.33
COL9A3-206ENST00000466532 LY6G6DO95868 133 aa17.09■□□□□ 0.33
COL9A3-206ENST00000466532 KRT16P08779 473 aa17.09■□□□□ 0.33
COL9A3-206ENST00000466532 PABPC4LP0CB38 370 aaKnown RBP17.09■□□□□ 0.33
COL9A3-206ENST00000466532 NR1H2P55055 460 aa17.09■□□□□ 0.33
COL9A3-206ENST00000466532 KLHL26Q53HC5 615 aa17.09■□□□□ 0.33
COL9A3-206ENST00000466532 TMEM201Q5SNT2 666 aa17.09■□□□□ 0.33
COL9A3-206ENST00000466532 IL23RQ5VWK5 629 aa17.09■□□□□ 0.33
COL9A3-206ENST00000466532 KRTCAP2Q8N6L1 136 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms