RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 CLDN20P56880 219 aa16.87■□□□□ 0.29
USP39-209ENST00000458268 ARHGAP11BQ3KRB8 267 aa16.87■□□□□ 0.29
USP39-209ENST00000458268 GTDC1Q4AE62 458 aa16.87■□□□□ 0.29
USP39-209ENST00000458268 CBLN3Q6UW01 205 aa16.87■□□□□ 0.29
USP39-209ENST00000458268 RELL2Q8NC24 303 aaPredicted RBP16.87■□□□□ 0.29
USP39-209ENST00000458268 CHDHQ8NE62 594 aaPredicted RBP16.87■□□□□ 0.29
USP39-209ENST00000458268 ATP6V1C2Q8NEY4 427 aa16.87■□□□□ 0.29
USP39-209ENST00000458268 ROPN1LQ96C74 230 aa16.87■□□□□ 0.29
USP39-209ENST00000458268 CALHM2Q9HA72 323 aa16.87■□□□□ 0.29
USP39-209ENST00000458268 HHATLQ9HCP6 504 aa16.87■□□□□ 0.29
USP39-209ENST00000458268 NPHS2Q9NP85 383 aa16.87■□□□□ 0.29
USP39-209ENST00000458268 NPDC1Q9NQX5 325 aaPredicted RBP16.87■□□□□ 0.29
USP39-209ENST00000458268 SDR39U1Q9NRG7 319 aaPredicted RBP16.87■□□□□ 0.29
USP39-209ENST00000458268 ZNF446Q9NWS9 450 aa16.87■□□□□ 0.29
USP39-209ENST00000458268 UNC79Q9P2D8 2635 aa16.87■□□□□ 0.29
USP39-209ENST00000458268 NAV2Q8IVL1 2488 aa16.86■□□□□ 0.29
USP39-209ENST00000458268 MBD3L4A6NDZ8 208 aaPredicted RBP16.86■□□□□ 0.29
USP39-209ENST00000458268 MBD3L3A6NE82 208 aaPredicted RBP16.86■□□□□ 0.29
USP39-209ENST00000458268 MBD3L5A6NJ08 208 aaPredicted RBP16.86■□□□□ 0.29
USP39-209ENST00000458268 SLC22A20A6NK97 555 aa16.86■□□□□ 0.29
USP39-209ENST00000458268 TGDSO95455 350 aa16.86■□□□□ 0.29
USP39-209ENST00000458268 NCF2P19878 526 aaPredicted RBP16.86■□□□□ 0.29
USP39-209ENST00000458268 CEACAM8P31997 349 aaPredicted RBP16.86■□□□□ 0.29
USP39-209ENST00000458268 TIMP3P35625 211 aa16.86■□□□□ 0.29
USP39-209ENST00000458268 EIF1AXP47813 144 aaKnown RBP16.86■□□□□ 0.29
USP39-209ENST00000458268 ANXA11P50995 505 aaKnown RBP16.86■□□□□ 0.29
USP39-209ENST00000458268 SIRPAP78324 504 aa16.86■□□□□ 0.29
USP39-209ENST00000458268 LRRC74AQ0VAA2 488 aa16.86■□□□□ 0.29
USP39-209ENST00000458268 FOXF1Q12946 379 aa16.86■□□□□ 0.29
USP39-209ENST00000458268 FOXF2Q12947 444 aa16.86■□□□□ 0.29
USP39-209ENST00000458268 SLC25A35Q3KQZ1 300 aa16.86■□□□□ 0.29
USP39-209ENST00000458268 KLHL26Q53HC5 615 aa16.86■□□□□ 0.29
USP39-209ENST00000458268 COX20Q5RI15 118 aa16.86■□□□□ 0.29
USP39-209ENST00000458268 SLC2A7Q6PXP3 512 aa16.86■□□□□ 0.29
USP39-209ENST00000458268 ANKFN1Q8N957 763 aa16.86■□□□□ 0.29
USP39-209ENST00000458268 GOT1L1Q8NHS2 421 aaPredicted RBP16.86■□□□□ 0.29
USP39-209ENST00000458268 MBD3L2Q8NHZ7 208 aaPredicted RBP16.86■□□□□ 0.29
USP39-209ENST00000458268 MIPOL1Q8TD10 442 aa16.86■□□□□ 0.29
USP39-209ENST00000458268 AURKBQ96GD4 344 aaPredicted RBP16.86■□□□□ 0.29
USP39-209ENST00000458268 ZNF845Q96IR2 970 aaPredicted RBP16.86■□□□□ 0.29
USP39-209ENST00000458268 ITCHQ96J02 903 aa16.86■□□□□ 0.29
USP39-209ENST00000458268 SLC6A13Q9NSD5 602 aa16.86■□□□□ 0.29
USP39-209ENST00000458268 CCDC167Q9P0B6 97 aa16.86■□□□□ 0.29
USP39-209ENST00000458268 A0A087WZY1 265 aa16.85■□□□□ 0.29
USP39-209ENST00000458268 FAM234BA2RU67 622 aa16.85■□□□□ 0.29
USP39-209ENST00000458268 SERINC4A6NH21 518 aa16.85■□□□□ 0.29
USP39-209ENST00000458268 HMGN4O00479 90 aa16.85■□□□□ 0.29
USP39-209ENST00000458268 H6PDO95479 791 aa16.85■□□□□ 0.29
USP39-209ENST00000458268 KRT75O95678 551 aa16.85■□□□□ 0.29
USP39-209ENST00000458268 TGM6O95932 706 aa16.85■□□□□ 0.29
USP39-209ENST00000458268 CSTAP01040 98 aa16.85■□□□□ 0.29
USP39-209ENST00000458268 UBTFL6P0CB48 400 aaPredicted RBP16.85■□□□□ 0.29
USP39-209ENST00000458268 NR2F1P10589 423 aa16.85■□□□□ 0.29
USP39-209ENST00000458268 ME2P23368 584 aa16.85■□□□□ 0.29
USP39-209ENST00000458268 CTSSP25774 331 aa16.85■□□□□ 0.29
USP39-209ENST00000458268 SFTPDP35247 375 aa16.85■□□□□ 0.29
USP39-209ENST00000458268 CRATP43155 626 aa16.85■□□□□ 0.29
USP39-209ENST00000458268 P2RX1P51575 399 aa16.85■□□□□ 0.29
USP39-209ENST00000458268 CLDN15P56746 228 aa16.85■□□□□ 0.29
USP39-209ENST00000458268 RPS3AP61247 264 aaKnown RBP16.85■□□□□ 0.29
USP39-209ENST00000458268 FUT5Q11128 374 aa16.85■□□□□ 0.29
USP39-209ENST00000458268 MYBPHQ13203 477 aa16.85■□□□□ 0.29
USP39-209ENST00000458268 SYPL1Q16563 259 aa16.85■□□□□ 0.29
USP39-209ENST00000458268 PLPPR5Q32ZL2 321 aa16.85■□□□□ 0.29
USP39-209ENST00000458268 HSP90B2PQ58FF3 399 aa16.85■□□□□ 0.29
USP39-209ENST00000458268 POMZP3Q6PJE2 187 aa16.85■□□□□ 0.29
USP39-209ENST00000458268 GDF7Q7Z4P5 450 aa16.85■□□□□ 0.29
USP39-209ENST00000458268 MTERF4Q7Z6M4 381 aaKnown RBP16.85■□□□□ 0.29
USP39-209ENST00000458268 LUZP2Q86TE4 346 aa16.85■□□□□ 0.29
USP39-209ENST00000458268 CNEP1R1Q8N9A8 125 aa16.85■□□□□ 0.29
USP39-209ENST00000458268 FIG4Q92562 907 aa16.85■□□□□ 0.29
USP39-209ENST00000458268 TM9SF2Q99805 663 aa16.85■□□□□ 0.29
USP39-209ENST00000458268 CCDC28BQ9BUN5 200 aa16.85■□□□□ 0.29
USP39-209ENST00000458268 PRRG4Q9BZD6 226 aa16.85■□□□□ 0.29
USP39-209ENST00000458268 ZNF350Q9GZX5 532 aa16.85■□□□□ 0.29
USP39-209ENST00000458268 QRSL1Q9H0R6 528 aaKnown RBP16.85■□□□□ 0.29
USP39-209ENST00000458268 CLCF1Q9UBD9 225 aa16.85■□□□□ 0.29
USP39-209ENST00000458268 STOML1Q9UBI4 398 aa16.85■□□□□ 0.29
USP39-209ENST00000458268 CRYBG3Q68DQ2 2970 aa16.84■□□□□ 0.29
USP39-209ENST00000458268 HEATR5AQ86XA9 2040 aa16.84■□□□□ 0.29
USP39-209ENST00000458268 A0A0G2JND7 137 aa16.84■□□□□ 0.29
USP39-209ENST00000458268 ZNF264O43296 627 aa16.84■□□□□ 0.29
USP39-209ENST00000458268 UGT2B17O75795 530 aa16.84■□□□□ 0.29
USP39-209ENST00000458268 CPA2P48052 419 aa16.84■□□□□ 0.29
USP39-209ENST00000458268 EEFSECP57772 596 aaKnown RBP16.84■□□□□ 0.29
USP39-209ENST00000458268 CHRNEQ04844 493 aa16.84■□□□□ 0.29
USP39-209ENST00000458268 TFF3Q07654 80 aa16.84■□□□□ 0.29
USP39-209ENST00000458268 TOMM34Q15785 309 aaPredicted RBP16.84■□□□□ 0.29
USP39-209ENST00000458268 GLYR1Q49A26 553 aaPredicted RBP16.84■□□□□ 0.29
USP39-209ENST00000458268 AGKQ53H12 422 aa16.84■□□□□ 0.29
USP39-209ENST00000458268 TYW3Q6IPR3 259 aaKnown RBP16.84■□□□□ 0.29
USP39-209ENST00000458268 HEPHL1Q6MZM0 1159 aa16.84■□□□□ 0.29
USP39-209ENST00000458268 ZNF619Q8N2I2 560 aa16.84■□□□□ 0.29
USP39-209ENST00000458268 TOR1AIP2Q8NFQ8 470 aa16.84■□□□□ 0.29
USP39-209ENST00000458268 FBXO27Q8NI29 283 aa16.84■□□□□ 0.29
USP39-209ENST00000458268 WNT2BQ93097 391 aa16.84■□□□□ 0.29
USP39-209ENST00000458268 ZBTB8AQ96BR9 441 aa16.84■□□□□ 0.29
USP39-209ENST00000458268 LRRC46Q96FV0 321 aa16.84■□□□□ 0.29
USP39-209ENST00000458268 NMUR2Q9GZQ4 415 aa16.84■□□□□ 0.29
USP39-209ENST00000458268 KCNE5Q9UJ90 142 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms