RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	SFTPD	P35247	375 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	MAP2K3	P46734	347 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	SLC1A6	P48664	564 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	CCR4	P51679	360 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	CASP9	P55211	416 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	RPS3A	P61247	264 aa	Known RBP	7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	SORD	Q00796	357 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	MLC1	Q15049	377 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	TESK1	Q15569	626 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	CD226	Q15762	336 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	BCL2A1	Q16548	175 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	CPEB4	Q17RY0	729 aa	Known RBP eCLIP	7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	EXOC3L2	Q2M3D2	409 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	PLPPR5	Q32ZL2	321 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	LSM12	Q3MHD2	195 aa	Known RBP	7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	OR4F3	Q6IEY1	312 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	OR2A2	Q6IF42	318 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	ZCCHC12	Q6PEW1	402 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	OLIG3	Q7RTU3	272 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	BTLA	Q7Z6A9	289 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	ANKRD46	Q86W74	232 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	WDR75	Q8IWA0	830 aa	Known RBP	7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	CLECL1	Q8IZS7	167 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	MGARP	Q8TDB4	240 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	OR5P2	Q8WZ92	322 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	STARD4	Q96DR4	205 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	ARSG	Q96EG1	525 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	ZC3HAV1L	Q96H79	300 aa	Known RBP	7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	UCN2	Q96RP3	112 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	STAC	Q99469	402 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	PRPF18	Q99633	342 aa	Known RBP	7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	TMEM109	Q9BVC6	243 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	ACTRT3	Q9BYD9	372 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	NUF2	Q9BZD4	464 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	C20orf27	Q9GZN8	174 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	PIGM	Q9H3S5	423 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	UBQLN4	Q9NRR5	601 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	MED17	Q9NVC6	651 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	NOP53	Q9NZM5	478 aa	Known RBP	7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	C6orf203	Q9P0P8	240 aa	Predicted RBP	7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	NTM	Q9P121	344 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	ST6GALNAC2	Q9UJ37	374 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	AP4B1	Q9Y6B7	739 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	ROS1	P08922	2347 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	ACAN	P16112	2415 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	FLNA	P21333	2647 aa	Known RBP	7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	IGLV3-32	A0A0A0MS00	114 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	RNF103-CHMP3	A0A140T963	221 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	TNFSF11	O14788	317 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	CASK	O14936	926 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	TM9SF1	O15321	606 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	BIRC5	O15392	142 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	CXCL13	O43927	109 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	TNFRSF21	O75509	655 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	CYP7B1	O75881	506 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	AQP8	O94778	261 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	SYNGR4	O95473	234 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	CPSF4	O95639	269 aa	Known RBP	7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	PLG	P00747	810 aa	Predicted RBP	7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	MYZAP	P0CAP1	466 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	ZNF17	P17021	662 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	DNASE1	P24855	282 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	KIR2DL2	P43627	348 aa	Predicted RBP	7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	SLC6A8	P48029	635 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	NME5	P56597	212 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	HBA1	P69905	142 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	ZNF117	Q03924	483 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	EMX2	Q04743	252 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	FAM27E3	Q08E93	113 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	FOXF1	Q12946	379 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	MAD2L1	Q13257	205 aa	Predicted RBP	7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	STX3	Q13277	289 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	MPP2	Q14168	576 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	DCST2	Q5T1A1	773 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	HHAT	Q5VTY9	493 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	ANKRD34A	Q69YU3	496 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	ZNF550	Q7Z398	422 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	GGN	Q86UU5	652 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	HOMEZ	Q8IX15	550 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	RIMKLA	Q8IXN7	391 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	ZNF527	Q8NB42	609 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	ATP6V1C2	Q8NEY4	427 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	OR4A15	Q8NGL6	344 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	OR10D3	Q8NH80	312 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	B4GALNT2	Q8NHY0	566 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	FAM110B	Q8TC76	370 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	SFXN5	Q8TD22	340 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	COQ8B	Q96D53	544 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	SLC35G5	Q96KT7	338 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	OR7D2	Q96RA2	312 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	DPY30	Q9C005	99 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	BHLHE41	Q9C0J9	482 aa	Predicted RBP	7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	PIGU	Q9H490	435 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	AKTIP	Q9H8T0	292 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	RNF122	Q9H9V4	155 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	NEUROD4	Q9HD90	331 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	DUSP22	Q9NRW4	184 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	PNPO	Q9NVS9	261 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	GPATCH2	Q9NW75	528 aa		7.79	□□□□□ -1.16
RFX3-209	ENST00000451859	KLHL28	Q9NXS3	571 aa		7.79	□□□□□ -1.16

Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms