RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 SLC45A3Q96JT2 553 aa8.48□□□□□ -1.05
NIPBL-202ENST00000448238 UBTD1Q9HAC8 227 aa8.48□□□□□ -1.05
NIPBL-202ENST00000448238 LAMC3Q9Y6N6 1575 aa8.48□□□□□ -1.05
NIPBL-202ENST00000448238 PER1O15534 1290 aaPredicted RBP8.48□□□□□ -1.05
NIPBL-202ENST00000448238 CELF2O95319 508 aaKnown RBP8.48□□□□□ -1.05
NIPBL-202ENST00000448238 JMJD7P0C870 316 aa8.48□□□□□ -1.05
NIPBL-202ENST00000448238 MMP8P22894 467 aa8.48□□□□□ -1.05
NIPBL-202ENST00000448238 RBMS1P29558 406 aaKnown RBP8.48□□□□□ -1.05
NIPBL-202ENST00000448238 TGFBR1P36897 503 aa8.48□□□□□ -1.05
NIPBL-202ENST00000448238 SLC18A1P54219 525 aa8.48□□□□□ -1.05
NIPBL-202ENST00000448238 ACSM1Q08AH1 577 aa8.48□□□□□ -1.05
NIPBL-202ENST00000448238 RAET1LQ5VY80 246 aa8.48□□□□□ -1.05
NIPBL-202ENST00000448238 TMEM198Q66K66 360 aa8.48□□□□□ -1.05
NIPBL-202ENST00000448238 OR10K1Q8NGX5 313 aa8.48□□□□□ -1.05
NIPBL-202ENST00000448238 CHRDQ9H2X0 955 aa8.48□□□□□ -1.05
NIPBL-202ENST00000448238 C12orf10Q9HB07 376 aa8.48□□□□□ -1.05
NIPBL-202ENST00000448238 KPTNQ9Y664 436 aa8.48□□□□□ -1.05
NIPBL-202ENST00000448238 PTPRTO14522 1441 aa8.48□□□□□ -1.05
NIPBL-202ENST00000448238 SERTM2A0A1B0GWG4 89 aa8.48□□□□□ -1.05
NIPBL-202ENST00000448238 NIPSNAP2O75323 286 aa8.48□□□□□ -1.05
NIPBL-202ENST00000448238 OR6K2Q8NGY2 324 aa8.48□□□□□ -1.05
NIPBL-202ENST00000448238 ADAMTS18Q8TE60 1221 aa8.48□□□□□ -1.05
NIPBL-202ENST00000448238 GPR62Q9BZJ7 368 aa8.48□□□□□ -1.05
NIPBL-202ENST00000448238 SPATC1LQ9H0A9 340 aa8.48□□□□□ -1.05
NIPBL-202ENST00000448238 MED14O60244 1454 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 NLRP1Q9C000 1473 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 KLF8O95600 359 aaPredicted RBP8.47□□□□□ -1.05
NIPBL-202ENST00000448238 CXADRP78310 365 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 TMEM135Q86UB9 458 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 OR2T11Q8NH01 316 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 IL1F10Q8WWZ1 152 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 SCLYQ96I15 445 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 S1PR3Q99500 378 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 NPAP1Q9NZP6 1156 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 PMS2P1A4D2B8 440 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 SLC16A7O60669 478 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 HLA-FP30511 346 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 G6PCP35575 357 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 BAK1Q16611 211 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 PPM1JQ5JR12 505 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 INTS5Q6P9B9 1019 aaKnown RBP8.47□□□□□ -1.05
NIPBL-202ENST00000448238 TCTEX1D1Q8N7M0 179 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 MFSD9Q8NBP5 474 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 OR9I1Q8NGQ6 314 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 OR5AK3PQ8NH89 298 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 AKTIPQ9H8T0 292 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 SLC2A4RGQ9NR83 387 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 NLE1Q9NVX2 485 aaPredicted RBP8.47□□□□□ -1.05
NIPBL-202ENST00000448238 CEP290O15078 2479 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 TMEM218A2RU14 115 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 OR5K4A6NMS3 321 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 SORBS2O94875 1100 aaKnown RBP8.47□□□□□ -1.05
NIPBL-202ENST00000448238 CLDN1O95832 211 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 LCATP04180 440 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 MGAT3Q09327 533 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 ATP6AP1Q15904 470 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 LCTLQ6UWM7 567 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 EIF4E3Q8N5X7 224 aaKnown RBP8.47□□□□□ -1.05
NIPBL-202ENST00000448238 MUL1Q969V5 352 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 MARC2Q969Z3 335 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 LRR1Q96L50 414 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 THAP7Q9BT49 309 aaPredicted RBP8.47□□□□□ -1.05
NIPBL-202ENST00000448238 ATP13A2Q9NQ11 1180 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 ARFGEF3Q5TH69 2177 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 M0QZK8 103 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 FAM189A1O60320 539 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 GGCTO75223 188 aaKnown RBP8.47□□□□□ -1.05
NIPBL-202ENST00000448238 MPIG6BO95866 241 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 HNRNPDQ14103 355 aaKnown RBP8.47□□□□□ -1.05
NIPBL-202ENST00000448238 EIF4HQ15056 248 aaKnown RBP8.47□□□□□ -1.05
NIPBL-202ENST00000448238 MOGAT2Q3SYC2 334 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 REM2Q8IYK8 340 aaPredicted RBP8.47□□□□□ -1.05
NIPBL-202ENST00000448238 CFAP52Q8N1V2 620 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 C10orf82Q8WW14 230 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 KCTD13Q8WZ19 329 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 CPQQ9Y646 472 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 SCN9AQ15858 1988 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 MMP3P08254 477 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 APEHP13798 732 aaKnown RBP8.47□□□□□ -1.05
NIPBL-202ENST00000448238 CD44P16070 742 aaKnown RBP8.47□□□□□ -1.05
NIPBL-202ENST00000448238 EFNA1P20827 205 aaPredicted RBP8.47□□□□□ -1.05
NIPBL-202ENST00000448238 SNU13P55769 128 aaKnown RBP8.47□□□□□ -1.05
NIPBL-202ENST00000448238 RPL24P83731 157 aaKnown RBP8.47□□□□□ -1.05
NIPBL-202ENST00000448238 TESK1Q15569 626 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 SBSNQ6UWP8 590 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 C6orf89Q6UWU4 347 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 B3GNT9Q6UX72 402 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 OR14L1PQ8NHC6 308 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 LMF1Q96S06 567 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 SHARPINQ9H0F6 387 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 A8MUA0 341 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 TRAPPC2LH3BP13 241 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 SOCS2O14508 198 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 TIMP2P16035 220 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 CSKP41240 450 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 EMX2Q04743 252 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 KLF1Q13351 362 aaPredicted RBP8.47□□□□□ -1.05
NIPBL-202ENST00000448238 KCTD11Q693B1 232 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 CNIH2Q6PI25 160 aa8.47□□□□□ -1.05
NIPBL-202ENST00000448238 CATSPERDQ86XM0 798 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms