RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 GPR50Q13585 617 aa16.13■□□□□ 0.17
PTPRF-209ENST00000438120 TMEM201Q5SNT2 666 aa16.13■□□□□ 0.17
PTPRF-209ENST00000438120 TRNP1Q6NT89 227 aa16.13■□□□□ 0.17
PTPRF-209ENST00000438120 PODNL1Q6PEZ8 512 aa16.13■□□□□ 0.17
PTPRF-209ENST00000438120 IL20RBQ6UXL0 311 aa16.13■□□□□ 0.17
PTPRF-209ENST00000438120 PXKQ7Z7A4 578 aa16.13■□□□□ 0.17
PTPRF-209ENST00000438120 ADAMTS16Q8TE57 1224 aa16.13■□□□□ 0.17
PTPRF-209ENST00000438120 TRUB1Q8WWH5 349 aaKnown RBP16.13■□□□□ 0.17
PTPRF-209ENST00000438120 GPR45Q9Y5Y3 372 aa16.13■□□□□ 0.17
PTPRF-209ENST00000438120 H7C2Y5 167 aa16.13■□□□□ 0.17
PTPRF-209ENST00000438120 CAMLGP49069 296 aa16.13■□□□□ 0.17
PTPRF-209ENST00000438120 PRLHRP49683 370 aa16.13■□□□□ 0.17
PTPRF-209ENST00000438120 ZNF33BQ06732 778 aa16.13■□□□□ 0.17
PTPRF-209ENST00000438120 SNIP1Q8TAD8 396 aaKnown RBP16.13■□□□□ 0.17
PTPRF-209ENST00000438120 HHATLQ9HCP6 504 aa16.13■□□□□ 0.17
PTPRF-209ENST00000438120 POLHQ9Y253 713 aa16.13■□□□□ 0.17
PTPRF-209ENST00000438120 KDM4EB2RXH2 506 aaPredicted RBP16.12■□□□□ 0.17
PTPRF-209ENST00000438120 ADH6P28332 368 aa16.12■□□□□ 0.17
PTPRF-209ENST00000438120 VEZF1Q14119 521 aa16.12■□□□□ 0.17
PTPRF-209ENST00000438120 DCP2Q8IU60 420 aaKnown RBP16.12■□□□□ 0.17
PTPRF-209ENST00000438120 LILRB2Q8N423 598 aa16.12■□□□□ 0.17
PTPRF-209ENST00000438120 MYH6P13533 1939 aa16.12■□□□□ 0.17
PTPRF-209ENST00000438120 LOC102723532A0A0G2JNH3 316 aa16.12■□□□□ 0.17
PTPRF-209ENST00000438120 RAB3AP20336 220 aa16.12■□□□□ 0.17
PTPRF-209ENST00000438120 CHMP24386 653 aa16.12■□□□□ 0.17
PTPRF-209ENST00000438120 SERPINA11Q86U17 422 aa16.12■□□□□ 0.17
PTPRF-209ENST00000438120 SLC2A12Q8TD20 617 aa16.12■□□□□ 0.17
PTPRF-209ENST00000438120 CHPT1Q8WUD6 406 aa16.12■□□□□ 0.17
PTPRF-209ENST00000438120 ASB11Q8WXH4 323 aa16.12■□□□□ 0.17
PTPRF-209ENST00000438120 C4orf36Q96KX1 117 aa16.12■□□□□ 0.17
PTPRF-209ENST00000438120 ZNF443Q9Y2A4 671 aaPredicted RBP16.12■□□□□ 0.17
PTPRF-209ENST00000438120 CARD8Q9Y2G2 431 aa16.12■□□□□ 0.17
PTPRF-209ENST00000438120 USP3Q9Y6I4 520 aa16.12■□□□□ 0.17
PTPRF-209ENST00000438120 ZBTB42B2RXF5 422 aa16.12■□□□□ 0.17
PTPRF-209ENST00000438120 ZNF14P17017 642 aaPredicted RBP16.12■□□□□ 0.17
PTPRF-209ENST00000438120 CAV2P51636 162 aa16.12■□□□□ 0.17
PTPRF-209ENST00000438120 SELPLGQ14242 412 aa16.12■□□□□ 0.17
PTPRF-209ENST00000438120 RPE65Q16518 533 aa16.12■□□□□ 0.17
PTPRF-209ENST00000438120 ATOH1Q92858 354 aaPredicted RBP16.12■□□□□ 0.17
PTPRF-209ENST00000438120 PRRC1Q96M27 445 aa16.12■□□□□ 0.17
PTPRF-209ENST00000438120 SDK1Q7Z5N4 2213 aa16.12■□□□□ 0.17
PTPRF-209ENST00000438120 ATXN1LP0C7T5 689 aaKnown RBP16.12■□□□□ 0.17
PTPRF-209ENST00000438120 CSNK1A1P48729 337 aa16.12■□□□□ 0.17
PTPRF-209ENST00000438120 TANGO2Q6ICL3 276 aa16.12■□□□□ 0.17
PTPRF-209ENST00000438120 PAQR9Q6ZVX9 377 aa16.12■□□□□ 0.17
PTPRF-209ENST00000438120 CHRM4P08173 479 aa16.12■□□□□ 0.17
PTPRF-209ENST00000438120 NUDT7P0C024 238 aa16.12■□□□□ 0.17
PTPRF-209ENST00000438120 ABHD12BQ7Z5M8 362 aaPredicted RBP16.12■□□□□ 0.17
PTPRF-209ENST00000438120 ADGRG5Q8IZF4 528 aa16.12■□□□□ 0.17
PTPRF-209ENST00000438120 INTS14Q96SY0 518 aa16.12■□□□□ 0.17
PTPRF-209ENST00000438120 ANKRD60Q9BZ19 345 aa16.12■□□□□ 0.17
PTPRF-209ENST00000438120 PLEKHA3Q9HB20 300 aa16.12■□□□□ 0.17
PTPRF-209ENST00000438120 INIPQ9NRY2 104 aa16.12■□□□□ 0.17
PTPRF-209ENST00000438120 ABRACLQ9P1F3 81 aa16.12■□□□□ 0.17
PTPRF-209ENST00000438120 HTR2AP28223 471 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 CA5AP35218 305 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 MPP7Q5T2T1 576 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 PLAG1Q6DJT9 500 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 LKAAEAR1Q8TD35 194 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 GPR148Q8TDV2 347 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 OR52D1Q9H346 318 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 SACM1LQ9NTJ5 587 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 DNAJB11Q9UBS4 358 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 INTS6Q9UL03 887 aaKnown RBP16.11■□□□□ 0.17
PTPRF-209ENST00000438120 NUMBLQ9Y6R0 609 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 LYRM1O43325 122 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 F13BP05160 661 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 CSNK1EP49674 416 aaKnown RBP16.11■□□□□ 0.17
PTPRF-209ENST00000438120 FGL1Q08830 312 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 MEX3BQ6ZN04 569 aaKnown RBP16.11■□□□□ 0.17
PTPRF-209ENST00000438120 SYNPRQ8TBG9 265 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 GCDHQ92947 438 aaPredicted RBP16.11■□□□□ 0.17
PTPRF-209ENST00000438120 TRMT2BQ96GJ1 504 aaKnown RBP16.11■□□□□ 0.17
PTPRF-209ENST00000438120 SENP5Q96HI0 755 aaPredicted RBP16.11■□□□□ 0.17
PTPRF-209ENST00000438120 OR6C2Q9NZP2 312 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 B8ZZF3 427 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 ABHD11Q8NFV4 315 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 BIRC8Q96P09 236 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 A6NIZ1 184 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 CASC3O15234 703 aaKnown RBP16.11■□□□□ 0.17
PTPRF-209ENST00000438120 CPMP14384 443 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 PPP5CP53041 499 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 RAP1BP61224 184 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 RAP1AP62834 184 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 HBA1P69905 142 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 NFATC4Q14934 902 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 OR1Q1Q15612 314 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 CGB2Q6NT52 195 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 NRG4Q8WWG1 115 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 ATOH8Q96SQ7 321 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 CCDC32Q9BV29 185 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 QRSL1Q9H0R6 528 aaKnown RBP16.11■□□□□ 0.17
PTPRF-209ENST00000438120 CHRDQ9H2X0 955 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 FAM86C1Q9NVL1 165 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 MCTS1Q9ULC4 181 aaKnown RBP16.11■□□□□ 0.17
PTPRF-209ENST00000438120 PCDHGA8Q9Y5G5 932 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 DCNP07585 359 aaKnown RBP16.11■□□□□ 0.17
PTPRF-209ENST00000438120 F3P13726 295 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 S100PP25815 95 aa16.11■□□□□ 0.17
PTPRF-209ENST00000438120 ADARB1P78563 741 aaKnown RBP16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms