RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 GIMAP2Q9UG22 337 aa12.97□□□□□ -0.33
SDC1-204ENST00000429035 PIP5K1BO14986 540 aa12.96□□□□□ -0.33
SDC1-204ENST00000429035 LSM1O15116 133 aaKnown RBP12.96□□□□□ -0.33
SDC1-204ENST00000429035 CLOCKO15516 846 aa12.96□□□□□ -0.33
SDC1-204ENST00000429035 KLF4O43474 513 aa12.96□□□□□ -0.33
SDC1-204ENST00000429035 CNOT4O95628 575 aaKnown RBP12.96□□□□□ -0.33
SDC1-204ENST00000429035 CHRNGP07510 517 aa12.96□□□□□ -0.33
SDC1-204ENST00000429035 NGFRP08138 427 aa12.96□□□□□ -0.33
SDC1-204ENST00000429035 IL32P24001 234 aa12.96□□□□□ -0.33
SDC1-204ENST00000429035 SOAT1P35610 550 aa12.96□□□□□ -0.33
SDC1-204ENST00000429035 MAP3K8P41279 467 aa12.96□□□□□ -0.33
SDC1-204ENST00000429035 CCR4P51679 360 aa12.96□□□□□ -0.33
SDC1-204ENST00000429035 ATP5J2P56134 94 aa12.96□□□□□ -0.33
SDC1-204ENST00000429035 ZNF117Q03924 483 aa12.96□□□□□ -0.33
SDC1-204ENST00000429035 PDE7AQ13946 482 aa12.96□□□□□ -0.33
SDC1-204ENST00000429035 CAPRIN1Q14444 709 aaKnown RBP12.96□□□□□ -0.33
SDC1-204ENST00000429035 TSC22D1Q15714 1073 aa12.96□□□□□ -0.33
SDC1-204ENST00000429035 ZNF239Q16600 458 aaKnown RBP12.96□□□□□ -0.33
SDC1-204ENST00000429035 TMEM201Q5SNT2 666 aa12.96□□□□□ -0.33
SDC1-204ENST00000429035 CPTPQ5TA50 214 aa12.96□□□□□ -0.33
SDC1-204ENST00000429035 CDC73Q6P1J9 531 aa12.96□□□□□ -0.33
SDC1-204ENST00000429035 LILRA2Q8N149 483 aa12.96□□□□□ -0.33
SDC1-204ENST00000429035 OR7A2PQ8NGA2 310 aa12.96□□□□□ -0.33
SDC1-204ENST00000429035 POC1BQ8TC44 478 aa12.96□□□□□ -0.33
SDC1-204ENST00000429035 AKAP1Q92667 903 aaKnown RBP eCLIP12.96□□□□□ -0.33
SDC1-204ENST00000429035 HOXB13Q92826 284 aaPredicted RBP12.96□□□□□ -0.33
SDC1-204ENST00000429035 OSTF1Q92882 214 aa12.96□□□□□ -0.33
SDC1-204ENST00000429035 C1orf50Q9BV19 199 aa12.96□□□□□ -0.33
SDC1-204ENST00000429035 BTBD2Q9BX70 525 aa12.96□□□□□ -0.33
SDC1-204ENST00000429035 SRXN1Q9BYN0 137 aa12.96□□□□□ -0.33
SDC1-204ENST00000429035 GLRX2Q9NS18 164 aa12.96□□□□□ -0.33
SDC1-204ENST00000429035 SIRT3Q9NTG7 399 aaPredicted RBP12.96□□□□□ -0.33
SDC1-204ENST00000429035 TMED5Q9Y3A6 229 aa12.96□□□□□ -0.33
SDC1-204ENST00000429035 HIVEP2P31629 2446 aa12.96□□□□□ -0.34
SDC1-204ENST00000429035 TLDC2A0PJX2 215 aa12.95□□□□□ -0.34
SDC1-204ENST00000429035 C7orf72A4D263 438 aa12.95□□□□□ -0.34
SDC1-204ENST00000429035 TMEM114B3SHH9 223 aa12.95□□□□□ -0.34
SDC1-204ENST00000429035 INAFM1C9JVW0 142 aa12.95□□□□□ -0.34
SDC1-204ENST00000429035 NPIPB8E9PQR5 432 aa12.95□□□□□ -0.34
SDC1-204ENST00000429035 HS3ST1O14792 307 aa12.95□□□□□ -0.34
SDC1-204ENST00000429035 SCAMP2O15127 329 aaKnown RBP12.95□□□□□ -0.34
SDC1-204ENST00000429035 ADAMDEC1O15204 470 aa12.95□□□□□ -0.34
SDC1-204ENST00000429035 TBX19O60806 448 aa12.95□□□□□ -0.34
SDC1-204ENST00000429035 TRIM13O60858 407 aa12.95□□□□□ -0.34
SDC1-204ENST00000429035 SKAP2O75563 359 aaPredicted RBP12.95□□□□□ -0.34
SDC1-204ENST00000429035 NTN1O95631 604 aa12.95□□□□□ -0.34
SDC1-204ENST00000429035 HMGN2P05204 90 aaKnown RBP12.95□□□□□ -0.34
SDC1-204ENST00000429035 BCKDHAP12694 445 aa12.95□□□□□ -0.34
SDC1-204ENST00000429035 MAPK1P28482 360 aa12.95□□□□□ -0.34
SDC1-204ENST00000429035 FRKP42685 505 aaPredicted RBP12.95□□□□□ -0.34
SDC1-204ENST00000429035 CARD18P57730 90 aa12.95□□□□□ -0.34
SDC1-204ENST00000429035 ZNF844Q08AG5 666 aa12.95□□□□□ -0.34
SDC1-204ENST00000429035 NDUFAF6Q330K2 333 aa12.95□□□□□ -0.34
SDC1-204ENST00000429035 GTF2IRD2BQ6EKJ0 949 aa12.95□□□□□ -0.34
SDC1-204ENST00000429035 ZCCHC12Q6PEW1 402 aa12.95□□□□□ -0.34
SDC1-204ENST00000429035 LRIG3Q6UXM1 1119 aa12.95□□□□□ -0.34
SDC1-204ENST00000429035 SH2D5Q6ZV89 423 aa12.95□□□□□ -0.34
SDC1-204ENST00000429035 GTF2IRD2Q86UP8 949 aa12.95□□□□□ -0.34
SDC1-204ENST00000429035 TRABD2AQ86V40 505 aa12.95□□□□□ -0.34
SDC1-204ENST00000429035 ZNF527Q8NB42 609 aa12.95□□□□□ -0.34
SDC1-204ENST00000429035 FAM110BQ8TC76 370 aa12.95□□□□□ -0.34
SDC1-204ENST00000429035 ACTRT2Q8TDY3 377 aa12.95□□□□□ -0.34
SDC1-204ENST00000429035 CPNE4Q96A23 557 aaPredicted RBP12.95□□□□□ -0.34
SDC1-204ENST00000429035 S100PBPQ96BU1 408 aa12.95□□□□□ -0.34
SDC1-204ENST00000429035 TRMOQ9BU70 441 aa12.95□□□□□ -0.34
SDC1-204ENST00000429035 MECRQ9BV79 373 aa12.95□□□□□ -0.34
SDC1-204ENST00000429035 TIGARQ9NQ88 270 aa12.95□□□□□ -0.34
SDC1-204ENST00000429035 FAF1Q9UNN5 650 aaPredicted RBP12.95□□□□□ -0.34
SDC1-204ENST00000429035 CARD8Q9Y2G2 431 aa12.95□□□□□ -0.34
SDC1-204ENST00000429035 DNAJC15Q9Y5T4 150 aa12.95□□□□□ -0.34
SDC1-204ENST00000429035 CSPG4Q6UVK1 2322 aa12.95□□□□□ -0.34
SDC1-204ENST00000429035 IGHV3-15A0A0B4J1V0 119 aa12.94□□□□□ -0.34
SDC1-204ENST00000429035 A0A1W2PQD3 144 aa12.94□□□□□ -0.34
SDC1-204ENST00000429035 H3BNH8 94 aa12.94□□□□□ -0.34
SDC1-204ENST00000429035 GTPBP1O00178 669 aaKnown RBP12.94□□□□□ -0.34
SDC1-204ENST00000429035 CFLARO15519 480 aa12.94□□□□□ -0.34
SDC1-204ENST00000429035 OIP5O43482 229 aa12.94□□□□□ -0.34
SDC1-204ENST00000429035 PEX11AO75192 247 aa12.94□□□□□ -0.34
SDC1-204ENST00000429035 C6orf47O95873 294 aa12.94□□□□□ -0.34
SDC1-204ENST00000429035 PABPC4LP0CB38 370 aaKnown RBP12.94□□□□□ -0.34
SDC1-204ENST00000429035 PSMA4P25789 261 aaKnown RBP12.94□□□□□ -0.34
SDC1-204ENST00000429035 LCN1P31025 176 aa12.94□□□□□ -0.34
SDC1-204ENST00000429035 RPL3P39023 403 aaKnown RBP12.94□□□□□ -0.34
SDC1-204ENST00000429035 EIF1P41567 113 aaKnown RBP12.94□□□□□ -0.34
SDC1-204ENST00000429035 VEZF1Q14119 521 aa12.94□□□□□ -0.34
SDC1-204ENST00000429035 DCST2Q5T1A1 773 aa12.94□□□□□ -0.34
SDC1-204ENST00000429035 ZCCHC23Q6ZST2 131 aa12.94□□□□□ -0.34
SDC1-204ENST00000429035 NUFIP2Q7Z417 695 aaKnown RBP12.94□□□□□ -0.34
SDC1-204ENST00000429035 BANPQ8N9N5 519 aa12.94□□□□□ -0.34
SDC1-204ENST00000429035 STEAP2Q8NFT2 490 aa12.94□□□□□ -0.34
SDC1-204ENST00000429035 OR5AK3PQ8NH89 298 aa12.94□□□□□ -0.34
SDC1-204ENST00000429035 FBXO27Q8NI29 283 aa12.94□□□□□ -0.34
SDC1-204ENST00000429035 RAB3IL1Q8TBN0 382 aa12.94□□□□□ -0.34
SDC1-204ENST00000429035 ADAMTS15Q8TE58 950 aa12.94□□□□□ -0.34
SDC1-204ENST00000429035 RNF128Q8TEB7 428 aa12.94□□□□□ -0.34
SDC1-204ENST00000429035 ZFP90Q8TF47 636 aa12.94□□□□□ -0.34
SDC1-204ENST00000429035 MTERF3Q96E29 417 aa12.94□□□□□ -0.34
SDC1-204ENST00000429035 APOPT1Q96IL0 206 aa12.94□□□□□ -0.34
SDC1-204ENST00000429035 PPP3R2Q96LZ3 170 aa12.94□□□□□ -0.34
SDC1-204ENST00000429035 PPCSQ9HAB8 311 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms