RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 ATP6V1C2Q8NEY4 427 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 SLC25A36Q96CQ1 311 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 MRGPRX3Q96LB0 322 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 CD244Q9BZW8 370 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 FRMPD3Q5JV73 1810 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 OR2AT4A6NND4 320 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 ALDOAP04075 364 aaKnown RBP9.19□□□□□ -0.94
USP54-205ENST00000424265 SLC35E2BP0CK96 405 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 IDH2P48735 452 aaKnown RBP9.19□□□□□ -0.94
USP54-205ENST00000424265 ADPRHP54922 357 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 PKIAP61925 76 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 BTG1P62324 171 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 CPSF6Q16630 551 aaKnown RBP eCLIP9.19□□□□□ -0.94
USP54-205ENST00000424265 LIPJQ5W064 366 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 CD276Q5ZPR3 534 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 TRIM40Q6P9F5 258 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 PDZD3Q86UT5 571 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 YIPF4Q9BSR8 244 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 OR51B6Q9H340 312 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 RNF167Q9H6Y7 350 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 EMCNQ9ULC0 261 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 USP22Q9UPT9 525 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 B4DGG1 531 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 GP1BAP07359 652 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 PPT1P50897 306 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 PPP3R1P63098 170 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 PTSQ03393 145 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 PLA2G7Q13093 441 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 DYRK1AQ13627 763 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 ZNF460Q14592 562 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 HENMT1Q5T8I9 393 aaKnown RBP9.19□□□□□ -0.94
USP54-205ENST00000424265 ATRAIDQ6UW56 229 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 DMRTC2Q8IXT2 367 aaPredicted RBP9.19□□□□□ -0.94
USP54-205ENST00000424265 KLHDC8BQ8IXV7 354 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 OR9I1Q8NGQ6 314 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 PIGKQ92643 395 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 FCRL1Q96LA6 429 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 ZNF382Q96SR6 550 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 PRO1933Q9H354 126 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 LRTM1Q9HBL6 345 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 EPHA6Q9UF33 1036 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 ZNF490Q9ULM2 529 aaPredicted RBP9.19□□□□□ -0.94
USP54-205ENST00000424265 RPH3ALQ9UNE2 315 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 NEU3Q9UQ49 428 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 KCNK6Q9Y257 313 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 PCDHB14Q9Y5E9 798 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 DSCR3O14972 297 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 OR1I1O60431 355 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 HCKP08631 526 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 NOS3P29474 1203 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 DDTP30046 118 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 ASTLQ6HA08 431 aaPredicted RBP9.19□□□□□ -0.94
USP54-205ENST00000424265 FAM111BQ6SJ93 734 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 Q6ZSR6 202 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 TPRA1Q86W33 373 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 CBLN2Q8IUK8 224 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 CADM4Q8NFZ8 388 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 OR10K1Q8NGX5 313 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 TWIST2Q8WVJ9 160 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 NCDNQ9UBB6 729 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 SIGLEC14Q08ET2 396 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 THOC6Q86W42 341 aaKnown RBP9.19□□□□□ -0.94
USP54-205ENST00000424265 ZNF511Q8NB15 262 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 FAM122AQ96E09 287 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 ATG10Q9H0Y0 220 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 AMBNQ9NP70 447 aa9.19□□□□□ -0.94
USP54-205ENST00000424265 CASKO14936 926 aa9.18□□□□□ -0.94
USP54-205ENST00000424265 CREG1O75629 220 aa9.18□□□□□ -0.94
USP54-205ENST00000424265 SLC22A3O75751 556 aa9.18□□□□□ -0.94
USP54-205ENST00000424265 ATP6AP2O75787 350 aa9.18□□□□□ -0.94
USP54-205ENST00000424265 UBXN7O94888 489 aa9.18□□□□□ -0.94
USP54-205ENST00000424265 SPDEFO95238 335 aa9.18□□□□□ -0.94
USP54-205ENST00000424265 PPP3CBP16298 524 aa9.18□□□□□ -0.94
USP54-205ENST00000424265 PIGAP37287 484 aa9.18□□□□□ -0.94
USP54-205ENST00000424265 ISL1P61371 349 aa9.18□□□□□ -0.94
USP54-205ENST00000424265 IRF9Q00978 393 aa9.18□□□□□ -0.94
USP54-205ENST00000424265 PPP1R8Q12972 351 aaKnown RBP9.18□□□□□ -0.94
USP54-205ENST00000424265 OR8G1Q15617 311 aa9.18□□□□□ -0.94
USP54-205ENST00000424265 SLC29A4Q7RTT9 530 aa9.18□□□□□ -0.94
USP54-205ENST00000424265 ZNF551Q7Z340 670 aaPredicted RBP9.18□□□□□ -0.94
USP54-205ENST00000424265 RXFP4Q8TDU9 374 aa9.18□□□□□ -0.94
USP54-205ENST00000424265 RSC1A1Q92681 617 aa9.18□□□□□ -0.94
USP54-205ENST00000424265 ISL2Q96A47 359 aa9.18□□□□□ -0.94
USP54-205ENST00000424265 KIAA1143Q96AT1 154 aaPredicted RBP9.18□□□□□ -0.94
USP54-205ENST00000424265 MENTQ9BUN1 341 aa9.18□□□□□ -0.94
USP54-205ENST00000424265 IFT27Q9BW83 186 aa9.18□□□□□ -0.94
USP54-205ENST00000424265 C1QTNF2Q9BXJ5 285 aa9.18□□□□□ -0.94
USP54-205ENST00000424265 OR10H1Q9Y4A9 318 aa9.18□□□□□ -0.94
USP54-205ENST00000424265 FNDC1Q4ZHG4 1894 aaPredicted RBP9.18□□□□□ -0.94
USP54-205ENST00000424265 CXorf65A6NEN9 183 aa9.18□□□□□ -0.94
USP54-205ENST00000424265 TMEM233B4DJY2 109 aa9.18□□□□□ -0.94
USP54-205ENST00000424265 BCAT2O15382 392 aaPredicted RBP9.18□□□□□ -0.94
USP54-205ENST00000424265 SLC16A6O15403 523 aa9.18□□□□□ -0.94
USP54-205ENST00000424265 DLX3O60479 287 aa9.18□□□□□ -0.94
USP54-205ENST00000424265 GATBO75879 557 aaKnown RBP9.18□□□□□ -0.94
USP54-205ENST00000424265 DIRAS3O95661 229 aa9.18□□□□□ -0.94
USP54-205ENST00000424265 PIM3Q86V86 326 aa9.18□□□□□ -0.94
USP54-205ENST00000424265 CMTM7Q96FZ5 175 aa9.18□□□□□ -0.94
USP54-205ENST00000424265 MRGPRX1Q96LB2 322 aa9.18□□□□□ -0.94
USP54-205ENST00000424265 ZDHHC5Q9C0B5 715 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms