RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 ALG1L2C9J202 215 aa15.71■□□□□ 0.11
CCDC28B-202ENST00000421922 PDLIM1O00151 329 aa15.71■□□□□ 0.11
CCDC28B-202ENST00000421922 MASP2O00187 686 aa15.71■□□□□ 0.11
CCDC28B-202ENST00000421922 ZNF264O43296 627 aa15.71■□□□□ 0.11
CCDC28B-202ENST00000421922 FMO6PO60774 539 aa15.71■□□□□ 0.11
CCDC28B-202ENST00000421922 PRKAR1AP10644 381 aa15.71■□□□□ 0.11
CCDC28B-202ENST00000421922 SPINK2P20155 84 aa15.71■□□□□ 0.11
CCDC28B-202ENST00000421922 ADH7P40394 386 aa15.71■□□□□ 0.11
CCDC28B-202ENST00000421922 HOXC5Q00444 222 aa15.71■□□□□ 0.11
CCDC28B-202ENST00000421922 ST3GAL3Q11203 375 aa15.71■□□□□ 0.11
CCDC28B-202ENST00000421922 CLN3Q13286 438 aa15.71■□□□□ 0.11
CCDC28B-202ENST00000421922 PIN1Q13526 163 aaPredicted RBP15.71■□□□□ 0.11
CCDC28B-202ENST00000421922 NPTX1Q15818 432 aa15.71■□□□□ 0.11
CCDC28B-202ENST00000421922 NTRK2Q16620 822 aa15.71■□□□□ 0.11
CCDC28B-202ENST00000421922 ENTPD8Q5MY95 495 aa15.71■□□□□ 0.11
CCDC28B-202ENST00000421922 EPHX4Q8IUS5 362 aa15.71■□□□□ 0.11
CCDC28B-202ENST00000421922 OFCC1Q8IZS5 231 aa15.71■□□□□ 0.11
CCDC28B-202ENST00000421922 POGLUT1Q8NBL1 392 aa15.71■□□□□ 0.11
CCDC28B-202ENST00000421922 RBM4BQ9BQ04 359 aaKnown RBP15.71■□□□□ 0.11
CCDC28B-202ENST00000421922 RBM4Q9BWF3 364 aaKnown RBP15.71■□□□□ 0.11
CCDC28B-202ENST00000421922 RSPO3Q9BXY4 272 aaPredicted RBP15.71■□□□□ 0.11
CCDC28B-202ENST00000421922 HHATLQ9HCP6 504 aa15.71■□□□□ 0.11
CCDC28B-202ENST00000421922 HPF1Q9NWY4 346 aa15.71■□□□□ 0.11
CCDC28B-202ENST00000421922 VNN3Q9NY84 501 aa15.71■□□□□ 0.11
CCDC28B-202ENST00000421922 EI24O14681 340 aa15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 CCNB2O95067 398 aa15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 OR5F1O95221 314 aa15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 RASAL1O95294 804 aa15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 ANGPTL1O95841 491 aa15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 RYKP34925 604 aa15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 CASRP41180 1078 aa15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 SLC6A8P48029 635 aa15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 HSPA13P48723 471 aa15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 Q0VFX4 171 aa15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 EXOC3L2Q2M3D2 409 aa15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 DCST1Q5T197 706 aa15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 DESI1Q6ICB0 168 aa15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 IL20RBQ6UXL0 311 aa15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 TSEN54Q7Z6J9 526 aaKnown RBP15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 ZNF605Q86T29 641 aa15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 MARCH3Q86UD3 253 aa15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 ZNF248Q8NDW4 579 aa15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 ADAMTS16Q8TE57 1224 aa15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 GIPC3Q8TF64 312 aa15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 FGF11Q92914 225 aa15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 HGDQ93099 445 aa15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 ALPK1Q96QP1 1244 aa15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 ZNF184Q99676 751 aaPredicted RBP15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 WFDC6Q9BQY6 131 aa15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 OSBPL10Q9BXB5 764 aa15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 TRIM2Q9C040 744 aa15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 LHPPQ9H008 270 aa15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 NMNAT1Q9HAN9 279 aaPredicted RBP15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 EXOSC3Q9NQT5 275 aaKnown RBP15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 SDHAF3Q9NRP4 125 aa15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 PDP1Q9P0J1 537 aaPredicted RBP15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 CNOT11Q9UKZ1 510 aaKnown RBP15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 A4GNTQ9UNA3 340 aa15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 CARD8Q9Y2G2 431 aa15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 ATRXP46100 2492 aa15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 FAM208BQ5VWN6 2430 aa15.7■□□□□ 0.1
CCDC28B-202ENST00000421922 TRAPPC13A5PLN9 417 aa15.69■□□□□ 0.1
CCDC28B-202ENST00000421922 ARGFXA6NJG6 315 aa15.69■□□□□ 0.1
CCDC28B-202ENST00000421922 FAAHO00519 579 aa15.69■□□□□ 0.1
CCDC28B-202ENST00000421922 SOCS2O14508 198 aa15.69■□□□□ 0.1
CCDC28B-202ENST00000421922 HCRTR2O43614 444 aa15.69■□□□□ 0.1
CCDC28B-202ENST00000421922 EIF4E2O60573 245 aaKnown RBP15.69■□□□□ 0.1
CCDC28B-202ENST00000421922 TPST2O60704 377 aa15.69■□□□□ 0.1
CCDC28B-202ENST00000421922 OR6B1O95007 311 aa15.69■□□□□ 0.1
CCDC28B-202ENST00000421922 NUDT14O95848 222 aa15.69■□□□□ 0.1
CCDC28B-202ENST00000421922 LINGO3P0C6S8 592 aa15.69■□□□□ 0.1
CCDC28B-202ENST00000421922 ZNF136P52737 540 aa15.69■□□□□ 0.1
CCDC28B-202ENST00000421922 DAG1Q14118 895 aa15.69■□□□□ 0.1
CCDC28B-202ENST00000421922 TRAM2Q15035 370 aa15.69■□□□□ 0.1
CCDC28B-202ENST00000421922 OR1Q1Q15612 314 aa15.69■□□□□ 0.1
CCDC28B-202ENST00000421922 CD226Q15762 336 aa15.69■□□□□ 0.1
CCDC28B-202ENST00000421922 NDUFAF6Q330K2 333 aa15.69■□□□□ 0.1
CCDC28B-202ENST00000421922 ABHD17BQ5VST6 288 aa15.69■□□□□ 0.1
CCDC28B-202ENST00000421922 PPP4R4Q6NUP7 873 aa15.69■□□□□ 0.1
CCDC28B-202ENST00000421922 RRM2BQ7LG56 351 aa15.69■□□□□ 0.1
CCDC28B-202ENST00000421922 CADM2Q8N3J6 435 aa15.69■□□□□ 0.1
CCDC28B-202ENST00000421922 ATG16L2Q8NAA4 619 aa15.69■□□□□ 0.1
CCDC28B-202ENST00000421922 OR10G3Q8NGC4 313 aa15.69■□□□□ 0.1
CCDC28B-202ENST00000421922 MAGEE2Q8TD90 523 aaPredicted RBP15.69■□□□□ 0.1
CCDC28B-202ENST00000421922 SLC38A4Q969I6 547 aa15.69■□□□□ 0.1
CCDC28B-202ENST00000421922 SLC41A3Q96GZ6 507 aa15.69■□□□□ 0.1
CCDC28B-202ENST00000421922 SH3YL1Q96HL8 342 aaPredicted RBP15.69■□□□□ 0.1
CCDC28B-202ENST00000421922 NODALQ96S42 347 aa15.69■□□□□ 0.1
CCDC28B-202ENST00000421922 LAT2Q9GZY6 243 aa15.69■□□□□ 0.1
CCDC28B-202ENST00000421922 ACAD8Q9UKU7 415 aa15.69■□□□□ 0.1
CCDC28B-202ENST00000421922 POLHQ9Y253 713 aa15.69■□□□□ 0.1
CCDC28B-202ENST00000421922 FADS1O60427 444 aa15.68■□□□□ 0.1
CCDC28B-202ENST00000421922 ZNF354AO60765 605 aaPredicted RBP15.68■□□□□ 0.1
CCDC28B-202ENST00000421922 HPRP00739 348 aa15.68■□□□□ 0.1
CCDC28B-202ENST00000421922 PRG2P13727 222 aa15.68■□□□□ 0.1
CCDC28B-202ENST00000421922 ITPKBP27987 946 aa15.68■□□□□ 0.1
CCDC28B-202ENST00000421922 ALDH3A2P51648 485 aa15.68■□□□□ 0.1
CCDC28B-202ENST00000421922 AQP4P55087 323 aa15.68■□□□□ 0.1
CCDC28B-202ENST00000421922 ACER2Q5QJU3 275 aa15.68■□□□□ 0.1
CCDC28B-202ENST00000421922 ATP1A1-AS1Q5TC04 95 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms