RNA–Protein interactions for RNA: ENST00000417088.2

RPS28-201, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-201ENST00000417088 POU6F2P78424 691 aaPredicted RBP13.21□□□□□ -0.29
RPS28-201ENST00000417088 ZNF844Q08AG5 666 aa13.21□□□□□ -0.29
RPS28-201ENST00000417088 FOXF1Q12946 379 aa13.21□□□□□ -0.29
RPS28-201ENST00000417088 CAPRIN1Q14444 709 aaKnown RBP13.21□□□□□ -0.29
RPS28-201ENST00000417088 ZNF239Q16600 458 aaKnown RBP13.21□□□□□ -0.29
RPS28-201ENST00000417088 KANK2Q63ZY3 851 aa13.21□□□□□ -0.29
RPS28-201ENST00000417088 TDRPQ86YL5 185 aa13.21□□□□□ -0.29
RPS28-201ENST00000417088 RNF128Q8TEB7 428 aa13.21□□□□□ -0.29
RPS28-201ENST00000417088 JADE3Q92613 823 aa13.21□□□□□ -0.29
RPS28-201ENST00000417088 MTERF3Q96E29 417 aa13.21□□□□□ -0.29
RPS28-201ENST00000417088 FAM120BQ96EK7 910 aaKnown RBP13.21□□□□□ -0.29
RPS28-201ENST00000417088 MDFIQ99750 246 aa13.21□□□□□ -0.29
RPS28-201ENST00000417088 TRMOQ9BU70 441 aa13.21□□□□□ -0.29
RPS28-201ENST00000417088 BTBD2Q9BX70 525 aa13.21□□□□□ -0.29
RPS28-201ENST00000417088 SRXN1Q9BYN0 137 aa13.21□□□□□ -0.29
RPS28-201ENST00000417088 CXorf56Q9H5V9 222 aa13.21□□□□□ -0.29
RPS28-201ENST00000417088 TMED5Q9Y3A6 229 aa13.21□□□□□ -0.29
RPS28-201ENST00000417088 SMIM23A6NLE4 172 aa13.2□□□□□ -0.3
RPS28-201ENST00000417088 OIP5O43482 229 aa13.2□□□□□ -0.3
RPS28-201ENST00000417088 GCM2O75603 506 aaPredicted RBP13.2□□□□□ -0.3
RPS28-201ENST00000417088 NTN1O95631 604 aa13.2□□□□□ -0.3
RPS28-201ENST00000417088 HSPA4LO95757 839 aa13.2□□□□□ -0.3
RPS28-201ENST00000417088 CHEK2O96017 543 aa13.2□□□□□ -0.3
RPS28-201ENST00000417088 HMGN2P05204 90 aaKnown RBP13.2□□□□□ -0.3
RPS28-201ENST00000417088 PABPC4LP0CB38 370 aaKnown RBP13.2□□□□□ -0.3
RPS28-201ENST00000417088 KRT4P19013 534 aa13.2□□□□□ -0.3
RPS28-201ENST00000417088 SFTPDP35247 375 aa13.2□□□□□ -0.3
RPS28-201ENST00000417088 EIF1P41567 113 aaKnown RBP13.2□□□□□ -0.3
RPS28-201ENST00000417088 ASMTP46597 345 aa13.2□□□□□ -0.3
RPS28-201ENST00000417088 ATP5J2P56134 94 aa13.2□□□□□ -0.3
RPS28-201ENST00000417088 ZNF117Q03924 483 aa13.2□□□□□ -0.3
RPS28-201ENST00000417088 LASP1Q14847 261 aaKnown RBP13.2□□□□□ -0.3
RPS28-201ENST00000417088 PCLAFQ15004 111 aa13.2□□□□□ -0.3
RPS28-201ENST00000417088 MLC1Q15049 377 aa13.2□□□□□ -0.3
RPS28-201ENST00000417088 GALNTL6Q49A17 601 aa13.2□□□□□ -0.3
RPS28-201ENST00000417088 ALKBH2Q6NS38 261 aa13.2□□□□□ -0.3
RPS28-201ENST00000417088 CBLN3Q6UW01 205 aa13.2□□□□□ -0.3
RPS28-201ENST00000417088 LRIG3Q6UXM1 1119 aa13.2□□□□□ -0.3
RPS28-201ENST00000417088 NUFIP2Q7Z417 695 aaKnown RBP13.2□□□□□ -0.3
RPS28-201ENST00000417088 MTERF4Q7Z6M4 381 aaKnown RBP13.2□□□□□ -0.3
RPS28-201ENST00000417088 C4orf33Q8N1A6 199 aa13.2□□□□□ -0.3
RPS28-201ENST00000417088 GABRG1Q8N1C3 465 aa13.2□□□□□ -0.3
RPS28-201ENST00000417088 STEAP2Q8NFT2 490 aa13.2□□□□□ -0.3
RPS28-201ENST00000417088 LILRB1Q8NHL6 650 aaPredicted RBP13.2□□□□□ -0.3
RPS28-201ENST00000417088 FBXO27Q8NI29 283 aa13.2□□□□□ -0.3
RPS28-201ENST00000417088 KIF18AQ8NI77 898 aa13.2□□□□□ -0.3
RPS28-201ENST00000417088 RAB3IL1Q8TBN0 382 aa13.2□□□□□ -0.3
RPS28-201ENST00000417088 PHOSPHO1Q8TCT1 267 aa13.2□□□□□ -0.3
RPS28-201ENST00000417088 ABHD3Q8WU67 409 aa13.2□□□□□ -0.3
RPS28-201ENST00000417088 AKAP1Q92667 903 aaKnown RBP eCLIP13.2□□□□□ -0.3
RPS28-201ENST00000417088 CDS1Q92903 461 aa13.2□□□□□ -0.3
RPS28-201ENST00000417088 S100PBPQ96BU1 408 aa13.2□□□□□ -0.3
RPS28-201ENST00000417088 STACQ99469 402 aa13.2□□□□□ -0.3
RPS28-201ENST00000417088 PIGUQ9H490 435 aa13.2□□□□□ -0.3
RPS28-201ENST00000417088 DUSP22Q9NRW4 184 aa13.2□□□□□ -0.3
RPS28-201ENST00000417088 ZCCHC3Q9NUD5 404 aaKnown RBP13.2□□□□□ -0.3
RPS28-201ENST00000417088 GIN1Q9NXP7 522 aa13.2□□□□□ -0.3
RPS28-201ENST00000417088 ATP6V1HQ9UI12 483 aa13.2□□□□□ -0.3
RPS28-201ENST00000417088 SONP18583 2426 aaKnown RBP13.2□□□□□ -0.3
RPS28-201ENST00000417088 NPIPA5A0A0B4J1W7 369 aa13.19□□□□□ -0.3
RPS28-201ENST00000417088 NPIPA7E9PJI5 369 aa13.19□□□□□ -0.3
RPS28-201ENST00000417088 ZNF195O14628 629 aa13.19□□□□□ -0.3
RPS28-201ENST00000417088 TRIM13O60858 407 aa13.19□□□□□ -0.3
RPS28-201ENST00000417088 FGF4P08620 206 aa13.19□□□□□ -0.3
RPS28-201ENST00000417088 NPIPA8P0DM63 369 aa13.19□□□□□ -0.3
RPS28-201ENST00000417088 ELK4P28324 431 aa13.19□□□□□ -0.3
RPS28-201ENST00000417088 RNF144AP50876 292 aaPredicted RBP13.19□□□□□ -0.3
RPS28-201ENST00000417088 PPP2R2BQ00005 443 aa13.19□□□□□ -0.3
RPS28-201ENST00000417088 RNPS1Q15287 305 aaKnown RBP13.19□□□□□ -0.3
RPS28-201ENST00000417088 TSC22D1Q15714 1073 aa13.19□□□□□ -0.3
RPS28-201ENST00000417088 UGT3A2Q3SY77 523 aa13.19□□□□□ -0.3
RPS28-201ENST00000417088 KLHL26Q53HC5 615 aa13.19□□□□□ -0.3
RPS28-201ENST00000417088 TMEM201Q5SNT2 666 aa13.19□□□□□ -0.3
RPS28-201ENST00000417088 ADAM5Q6NVV9 412 aa13.19□□□□□ -0.3
RPS28-201ENST00000417088 TFAP2EQ6VUC0 442 aa13.19□□□□□ -0.3
RPS28-201ENST00000417088 R3HCC1LQ7Z5L2 792 aaKnown RBP13.19□□□□□ -0.3
RPS28-201ENST00000417088 TUSC5Q8IXB3 177 aa13.19□□□□□ -0.3
RPS28-201ENST00000417088 OR7A2PQ8NGA2 310 aa13.19□□□□□ -0.3
RPS28-201ENST00000417088 EPS8L3Q8TE67 593 aaKnown RBP13.19□□□□□ -0.3
RPS28-201ENST00000417088 CPNE4Q96A23 557 aaPredicted RBP13.19□□□□□ -0.3
RPS28-201ENST00000417088 CHMP6Q96FZ7 201 aa13.19□□□□□ -0.3
RPS28-201ENST00000417088 REXO5Q96IC2 774 aaKnown RBP13.19□□□□□ -0.3
RPS28-201ENST00000417088 TACO1Q9BSH4 297 aaKnown RBP13.19□□□□□ -0.3
RPS28-201ENST00000417088 HDHD5Q9BXW7 423 aa13.19□□□□□ -0.3
RPS28-201ENST00000417088 TIGARQ9NQ88 270 aa13.19□□□□□ -0.3
RPS28-201ENST00000417088 KLHL13Q9P2N7 655 aa13.19□□□□□ -0.3
RPS28-201ENST00000417088 GIMAP2Q9UG22 337 aa13.19□□□□□ -0.3
RPS28-201ENST00000417088 MID2Q9UJV3 735 aa13.19□□□□□ -0.3
RPS28-201ENST00000417088 ICAM5Q9UMF0 924 aa13.19□□□□□ -0.3
RPS28-201ENST00000417088 LAMP3Q9UQV4 416 aa13.19□□□□□ -0.3
RPS28-201ENST00000417088 ACTL7BQ9Y614 415 aa13.19□□□□□ -0.3
RPS28-201ENST00000417088 FREM1Q5H8C1 2179 aa13.19□□□□□ -0.3
RPS28-201ENST00000417088 ATRQ13535 2644 aa13.18□□□□□ -0.3
RPS28-201ENST00000417088 TMEM233B4DJY2 109 aa13.18□□□□□ -0.3
RPS28-201ENST00000417088 KIF2AO00139 706 aaPredicted RBP13.18□□□□□ -0.3
RPS28-201ENST00000417088 PIP5K1BO14986 540 aa13.18□□□□□ -0.3
RPS28-201ENST00000417088 SCAMP2O15127 329 aaKnown RBP13.18□□□□□ -0.3
RPS28-201ENST00000417088 SOX30O94993 753 aa13.18□□□□□ -0.3
RPS28-201ENST00000417088 CHRNGP07510 517 aa13.18□□□□□ -0.3
RPS28-201ENST00000417088 LAMP1P11279 417 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms