RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 SPACA1Q9HBV2 294 aa3.88□□□□□ -1.79
BRCA1-204ENST00000412061 TREM1Q9NP99 234 aa3.88□□□□□ -1.79
BRCA1-204ENST00000412061 C15orf41Q9Y2V0 281 aa3.88□□□□□ -1.79
BRCA1-204ENST00000412061 ALG6Q9Y672 507 aa3.88□□□□□ -1.79
BRCA1-204ENST00000412061 SELENOKQ9Y6D0 94 aa3.88□□□□□ -1.79
BRCA1-204ENST00000412061 A0A0A6YYD4 124 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 TRBV11-1A0A0K0K1C0 115 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 A0A1B0GUV1 79 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 A0A1W2PPE3 182 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 TMCO5BA8MYB1 307 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 G3V4G9 280 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 K7ERI5 159 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 BCKDKO14874 412 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 EIF3HO15372 352 aaKnown RBP eCLIP3.87□□□□□ -1.79
BRCA1-204ENST00000412061 BUB3O43684 328 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 PRKNO60260 465 aaPredicted RBP3.87□□□□□ -1.79
BRCA1-204ENST00000412061 DIRAS1O95057 198 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 CAVIN2O95810 425 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 APOA1P02647 267 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 ATP1A1P05023 1023 aaKnown RBP3.87□□□□□ -1.79
BRCA1-204ENST00000412061 PLEKP08567 350 aaPredicted RBP3.87□□□□□ -1.79
BRCA1-204ENST00000412061 H2BFMP0C1H6 154 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 LIFP15018 202 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 H2AFXP16104 143 aaPredicted RBP3.87□□□□□ -1.79
BRCA1-204ENST00000412061 CEACAM8P31997 349 aaPredicted RBP3.87□□□□□ -1.79
BRCA1-204ENST00000412061 CDH5P33151 784 aaPredicted RBP3.87□□□□□ -1.79
BRCA1-204ENST00000412061 SOX3P41225 446 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 ACLYP53396 1101 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 YWHAGP61981 247 aaKnown RBP eCLIP3.87□□□□□ -1.79
BRCA1-204ENST00000412061 PHEXP78562 749 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 IL9RQ01113 521 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 RGS1Q08116 209 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 RBBP4Q09028 425 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 ILF3Q12906 894 aaKnown RBP eCLIP3.87□□□□□ -1.79
BRCA1-204ENST00000412061 GPR17Q13304 367 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 XRCC4Q13426 336 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 MLIPQ5VWP3 458 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 SLC22A10Q63ZE4 541 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 TWF2Q6IBS0 349 aaKnown RBP3.87□□□□□ -1.79
BRCA1-204ENST00000412061 SLC25A25Q6KCM7 469 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 NEPROQ6NW34 567 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 ATRAIDQ6UW56 229 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 HSDL2Q6YN16 418 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 C9orf139Q6ZV77 190 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 RNF130Q86XS8 419 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 OR4N5Q8IXE1 308 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 RFLNBQ8N5W9 214 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 PQLC3Q8N755 202 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 OR4C3Q8NH37 302 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 RHEBL1Q8TAI7 183 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 ZNF596Q8TC21 504 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 MARCH1Q8TCQ1 289 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 ACMSDQ8TDX5 336 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 ARNTL2Q8WYA1 636 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 ST6GAL2Q96JF0 529 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 C2orf48Q96LS8 159 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 PINK1Q9BXM7 581 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 DUSP16Q9BY84 665 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 IL22Q9GZX6 179 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 LYRM4Q9HD34 91 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 MRPS30Q9NP92 439 aaKnown RBP3.87□□□□□ -1.79
BRCA1-204ENST00000412061 NT5MQ9NPB1 228 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 PXMP2Q9NR77 195 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 PNO1Q9NRX1 252 aaKnown RBP3.87□□□□□ -1.79
BRCA1-204ENST00000412061 SIGLEC8Q9NYZ4 499 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 ZNF221Q9UK13 617 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.87□□□□□ -1.79
BRCA1-204ENST00000412061 STARD10Q9Y365 291 aa3.87□□□□□ -1.79
BRCA1-204ENST00000412061 FRMPD4Q14CM0 1322 aa3.86□□□□□ -1.79
BRCA1-204ENST00000412061 NEDD8-MDP1E9PL57 170 aa3.86□□□□□ -1.79
BRCA1-204ENST00000412061 POLR1CO15160 346 aaPredicted RBP3.86□□□□□ -1.79
BRCA1-204ENST00000412061 MSH4O15457 936 aa3.86□□□□□ -1.79
BRCA1-204ENST00000412061 CLOCKO15516 846 aa3.86□□□□□ -1.79
BRCA1-204ENST00000412061 TAPBPO15533 448 aa3.86□□□□□ -1.79
BRCA1-204ENST00000412061 PPIHO43447 177 aaKnown RBP3.86□□□□□ -1.79
BRCA1-204ENST00000412061 ZNF254O75437 659 aa3.86□□□□□ -1.79
BRCA1-204ENST00000412061 OR2J3O76001 311 aa3.86□□□□□ -1.79
BRCA1-204ENST00000412061 SNAI1O95863 264 aaPredicted RBP3.86□□□□□ -1.79
BRCA1-204ENST00000412061 SP1P08047 785 aa3.86□□□□□ -1.79
BRCA1-204ENST00000412061 IGFBP1P08833 259 aaPredicted RBP3.86□□□□□ -1.79
BRCA1-204ENST00000412061 ZNF24P17028 368 aa3.86□□□□□ -1.79
BRCA1-204ENST00000412061 IMPDH1P20839 514 aa3.86□□□□□ -1.79
BRCA1-204ENST00000412061 C4BPBP20851 252 aa3.86□□□□□ -1.79
BRCA1-204ENST00000412061 GTF2E2P29084 291 aaKnown RBP3.86□□□□□ -1.79
BRCA1-204ENST00000412061 UQCRFS1P47985 274 aa3.86□□□□□ -1.79
BRCA1-204ENST00000412061 ERVFC1-1P60608 527 aa3.86□□□□□ -1.79
BRCA1-204ENST00000412061 YWHAEP62258 255 aaKnown RBP3.86□□□□□ -1.79
BRCA1-204ENST00000412061 CDR2Q01850 454 aa3.86□□□□□ -1.79
BRCA1-204ENST00000412061 SLAQ13239 276 aa3.86□□□□□ -1.79
BRCA1-204ENST00000412061 SGSM1Q2NKQ1 1148 aa3.86□□□□□ -1.79
BRCA1-204ENST00000412061 TMEM52BQ4KMG9 183 aa3.86□□□□□ -1.79
BRCA1-204ENST00000412061 DMRTC1Q5HYR2 192 aa3.86□□□□□ -1.79
BRCA1-204ENST00000412061 BEND3Q5T5X7 828 aa3.86□□□□□ -1.79
BRCA1-204ENST00000412061 GDPD4Q6W3E5 623 aa3.86□□□□□ -1.79
BRCA1-204ENST00000412061 HSD11B1LQ7Z5J1 315 aa3.86□□□□□ -1.79
BRCA1-204ENST00000412061 ISCA2Q86U28 154 aa3.86□□□□□ -1.79
BRCA1-204ENST00000412061 HPS6Q86YV9 775 aa3.86□□□□□ -1.79
BRCA1-204ENST00000412061 OR10A7Q8NGE5 316 aa3.86□□□□□ -1.79
BRCA1-204ENST00000412061 OR5L2Q8NGL0 311 aa3.86□□□□□ -1.79
BRCA1-204ENST00000412061 OR1B1Q8NGR6 318 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms