RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 RARRES3Q9UL19 164 aa17.49■□□□□ 0.39
USP39-202ENST00000409025 USP34Q70CQ2 3546 aa17.49■□□□□ 0.39
USP39-202ENST00000409025 A0A1W2PPW3 197 aa17.49■□□□□ 0.39
USP39-202ENST00000409025 SYNDIG1LA6NDD5 238 aa17.49■□□□□ 0.39
USP39-202ENST00000409025 SERINC4A6NH21 518 aa17.49■□□□□ 0.39
USP39-202ENST00000409025 CKMT1AP12532 417 aa17.49■□□□□ 0.39
USP39-202ENST00000409025 ACAA2P42765 397 aaKnown RBP17.49■□□□□ 0.39
USP39-202ENST00000409025 EFNA3P52797 238 aa17.49■□□□□ 0.39
USP39-202ENST00000409025 SLC23A3Q6PIS1 610 aa17.49■□□□□ 0.39
USP39-202ENST00000409025 MRGPREQ86SM8 312 aa17.49■□□□□ 0.39
USP39-202ENST00000409025 ZSCAN1Q8NBB4 408 aa17.49■□□□□ 0.39
USP39-202ENST00000409025 GRHL3Q8TE85 626 aa17.49■□□□□ 0.39
USP39-202ENST00000409025 YIPF6Q96EC8 236 aa17.49■□□□□ 0.39
USP39-202ENST00000409025 LCORQ96JN0 433 aaPredicted RBP17.49■□□□□ 0.39
USP39-202ENST00000409025 HS6ST2Q96MM7 605 aa17.49■□□□□ 0.39
USP39-202ENST00000409025 TSSK6Q9BXA6 273 aa17.49■□□□□ 0.39
USP39-202ENST00000409025 HOXD1Q9GZZ0 328 aa17.49■□□□□ 0.39
USP39-202ENST00000409025 IL20Q9NYY1 176 aa17.49■□□□□ 0.39
USP39-202ENST00000409025 ZNF223Q9UK11 482 aaPredicted RBP17.49■□□□□ 0.39
USP39-202ENST00000409025 MRTO4Q9UKD2 239 aaKnown RBP17.49■□□□□ 0.39
USP39-202ENST00000409025 A0A0B4J2E0 115 aa17.48■□□□□ 0.39
USP39-202ENST00000409025 A0A1B0GX12 115 aa17.48■□□□□ 0.39
USP39-202ENST00000409025 FRG2CA6NGY1 282 aa17.48■□□□□ 0.39
USP39-202ENST00000409025 CHP2O43745 196 aa17.48■□□□□ 0.39
USP39-202ENST00000409025 CSTAP01040 98 aa17.48■□□□□ 0.39
USP39-202ENST00000409025 SYPP08247 313 aa17.48■□□□□ 0.39
USP39-202ENST00000409025 PTNP21246 168 aa17.48■□□□□ 0.39
USP39-202ENST00000409025 DUSP3P51452 185 aaPredicted RBP17.48■□□□□ 0.39
USP39-202ENST00000409025 PRKCDQ05655 676 aa17.48■□□□□ 0.39
USP39-202ENST00000409025 PLAG1Q6DJT9 500 aa17.48■□□□□ 0.39
USP39-202ENST00000409025 ZNF620Q6ZNG0 422 aa17.48■□□□□ 0.39
USP39-202ENST00000409025 SLC16A12Q6ZSM3 486 aa17.48■□□□□ 0.39
USP39-202ENST00000409025 LAPTM4BQ86VI4 370 aa17.48■□□□□ 0.39
USP39-202ENST00000409025 CDK20Q8IZL9 346 aa17.48■□□□□ 0.39
USP39-202ENST00000409025 CLDN22Q8N7P3 220 aa17.48■□□□□ 0.39
USP39-202ENST00000409025 PLPP5Q8NEB5 264 aa17.48■□□□□ 0.39
USP39-202ENST00000409025 OR4C3Q8NH37 302 aa17.48■□□□□ 0.39
USP39-202ENST00000409025 OIT3Q8WWZ8 545 aa17.48■□□□□ 0.39
USP39-202ENST00000409025 EFHD2Q96C19 240 aaPredicted RBP17.48■□□□□ 0.39
USP39-202ENST00000409025 CRELD1Q96HD1 420 aa17.48■□□□□ 0.39
USP39-202ENST00000409025 BCL7BQ9BQE9 202 aa17.48■□□□□ 0.39
USP39-202ENST00000409025 NUDT9Q9BW91 350 aa17.48■□□□□ 0.39
USP39-202ENST00000409025 CDCA4Q9BXL8 241 aa17.48■□□□□ 0.39
USP39-202ENST00000409025 TGIF2Q9GZN2 237 aa17.48■□□□□ 0.39
USP39-202ENST00000409025 NXF5Q9H1B4 397 aaKnown RBP17.48■□□□□ 0.39
USP39-202ENST00000409025 FLRT3Q9NZU0 649 aa17.48■□□□□ 0.39
USP39-202ENST00000409025 CTSFQ9UBX1 484 aa17.48■□□□□ 0.39
USP39-202ENST00000409025 TMEM5Q9Y2B1 443 aa17.48■□□□□ 0.39
USP39-202ENST00000409025 MED31Q9Y3C7 131 aa17.48■□□□□ 0.39
USP39-202ENST00000409025 CDH10Q9Y6N8 788 aa17.48■□□□□ 0.39
USP39-202ENST00000409025 A0A1B0GWA3 101 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 UNC119BA6NIH7 251 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 AGRPO00253 132 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 CNOT3O75175 753 aaKnown RBP17.47■□□□□ 0.39
USP39-202ENST00000409025 IL33O95760 270 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 IFI30P13284 250 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 DCAF7P61962 342 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 EFNB1P98172 346 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 NFATC3Q12968 1075 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 IRF3Q14653 427 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 CLEC12AQ5QGZ9 265 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 COX15Q7KZN9 410 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 SLITRK4Q8IW52 837 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 LSMEM1Q8N8F7 131 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 ZNF527Q8NB42 609 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 PFN4Q8NHR9 129 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 TMEM163Q8TC26 289 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 COPS7AQ9UBW8 275 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP17.47■□□□□ 0.39
USP39-202ENST00000409025 SLC35A3Q9Y2D2 325 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 C2orf92A0A1B0GVN3 265 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 CDC42EP2O14613 210 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 PRKNO60260 465 aaPredicted RBP17.47■□□□□ 0.39
USP39-202ENST00000409025 SCRG1O75711 98 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 OCA2Q04671 838 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 CLPPQ16740 277 aaPredicted RBP17.47■□□□□ 0.39
USP39-202ENST00000409025 HLA-DQA1Q5Y7H0 255 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 P2RY8Q86VZ1 359 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 CYP4Z2PQ8N1L4 340 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 ADIPOR1Q96A54 375 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 ARSGQ96EG1 525 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 RNF31Q96EP0 1072 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 LRR1Q96L50 414 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 GAL3ST4Q96RP7 486 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 GFM1Q96RP9 751 aaKnown RBP17.47■□□□□ 0.39
USP39-202ENST00000409025 LMF1Q96S06 567 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 GTPBP2Q9BX10 602 aaKnown RBP17.47■□□□□ 0.39
USP39-202ENST00000409025 DPH1Q9BZG8 443 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 UBQLN4Q9NRR5 601 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 SLC22A11Q9NSA0 550 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 RPS6KB2Q9UBS0 482 aa17.47■□□□□ 0.39
USP39-202ENST00000409025 COL5A1P20908 1838 aaPredicted RBP17.46■□□□□ 0.39
USP39-202ENST00000409025 EFCAB7A8K855 629 aa17.46■□□□□ 0.39
USP39-202ENST00000409025 ADAM11O75078 769 aa17.46■□□□□ 0.39
USP39-202ENST00000409025 GABARAPO95166 117 aa17.46■□□□□ 0.39
USP39-202ENST00000409025 ADORA3P0DMS8 318 aa17.46■□□□□ 0.39
USP39-202ENST00000409025 DBTP11182 482 aaKnown RBP17.46■□□□□ 0.39
USP39-202ENST00000409025 HPGDP15428 266 aa17.46■□□□□ 0.39
USP39-202ENST00000409025 ZNF91Q05481 1191 aa17.46■□□□□ 0.39
USP39-202ENST00000409025 DYNC1I2Q13409 638 aaKnown RBP17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms